New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	4141122 =	84 (3.380)	3 (0.120)	3/276	3.2	3.4%	coding (1016/2502 nt)	frwA	putative PTS enzyme: Hpr, enzyme I and II components
	?	NC_000913_3_pae_tpiA	4141145 =	88 (3.650)					coding (993/2502 nt)	frwA	putative PTS enzyme: Hpr, enzyme I and II components
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGCCGCCGCTTTTGAGCAACAATCCTTTGAGGTGATTTTTATCCAG  >  NC_000913_3_pae_tpiA/4140997‑4141291                                                                                                                                                     |                                                                                                                                                   tGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGATCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACAGCTCTCCCTGGCTCAACCCAACCCGCCCCTGCGATGCCATAGata                                                                                                                                                    >  2:212583/1‑149 (MQ=255)      acaCCGTCAGCGGTGCGGGCATGTTGGGGCAGCCAGACGCGCTGTTGCTCACGCAGGGGGGCCTGTACGCGGGCATCTGGGGCATAATAACGAGCTACGGCTTCCCCTGGCACAACCACAGTCGCCCCGGCGCTACCTGCGTTATAAAt                                                                                                                                               >  2:350453/3‑149 (MQ=255)       tACCGTCAGCGGTACGGGCTGGTTGGGTCAGCCAGACACGCTGTTGCTCACGCACGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTCCGGATTCCTTTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAAtt                                                                                                                                              <  2:320734/149‑2 (MQ=255)        aCCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCg                                                                                                                                             >  1:64367/1‑149 (MQ=255)           gTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTCCGGATTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGttt                                                                                                                                          <  1:397800/149‑1 (MQ=255)              aGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATaaa                                                                                                                                                >  1:186010/1‑140 (MQ=255)              aGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATaaa                                                                                                                                                <  2:186010/140‑1 (MQ=255)              aGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTttgtt                                                                                                                                       >  1:75540/1‑149 (MQ=255)                   tACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTtgctgc                                                                                                                                  <  1:35799/149‑1 (MQ=255)                        gCTTGTTGGGTCAGCCAGACACGCTGTTGCTCAAGCAGGGCGTCCTGTACGCGGGCGTCTTGCTAATAATAACGAGCTACGGCTTCCCCTGGCTAAACCACAATCGCCCCGGCGTTGCCGCCGATATCAATCGTTTGTTGCTTCCACgg                                                                                                                             >  1:211251/1‑149 (MQ=255)                         gtggttgGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGa                                                                                                                            <  1:407162/146‑1 (MQ=255)                         cTTGGTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGa                                                                                                                            <  2:418708/149‑1 (MQ=255)                             ttgGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGCCTCAACCACAATCGCCCCGGCGTTGCCGTTGATATAAATCGTTTTGTGCTGCCACGGAGTaa                                                                                                                        >  2:168614/1‑149 (MQ=255)                                    aGCCAGGCACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTGGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATGAATCGTTTGTTGCTGCCACGGAGTAAGGGCATc                                                                                                                 >  2:209174/1‑149 (MQ=255)                                      ccAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATCTAAATCGTTTGTTGCTGCCACCGGATAAGGGCATCaa                                                                                                               >  2:190139/1‑149 (MQ=255)                                      ccAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGTGCATCaa                                                                                                               >  1:62766/1‑149 (MQ=255)                                        aGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCTTCGATATAAAACGTTTGTTGCTGCCACGGAGTAAGGGCATCCata                                                                                                             >  2:42667/1‑149 (MQ=255)                                        aGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCAGGGGGTAAGGGCGTCacga                                                                                                             >  1:154617/1‑146 (MQ=255)                                         gACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAatat                                                                                                            >  1:91546/1‑149 (MQ=255)                                          ccagcgcgTTGCTCACGCAGGGCGTCCGGCACGTGTGTTTGCTGCTTATAATAACCAGCTACGGCCTCCTCTGGCTCAACCACAATCGCCCCGGCGGTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATc                                                                                                           <  2:100074/142‑1 (MQ=255)                                          ccacGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATc                                                                                                           <  1:337457/148‑1 (MQ=255)                                            acGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACCAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCca                                                                                                         >  1:280356/1‑149 (MQ=255)                                             cGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCcac                                                                                                        <  1:25971/149‑1 (MQ=255)                                             cGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTACCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCcac                                                                                                        <  1:280211/149‑1 (MQ=255)                                               cTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCTCCCGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCacac                                                                                                      <  1:413868/149‑1 (MQ=255)                                               cTGTTGCTCACGCAGGGCGGCATGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCacac                                                                                                      <  1:348837/149‑1 (MQ=255)                                                tGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCTGCGTTGCCGTCGATATGAATCGTTTGTTGCTGCCCCGGAGTAAGGGCATCAATATACAcccc                                                                                                     >  2:374559/1‑149 (MQ=255)                                                 gTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACacca                                                                                                    >  1:87268/1‑149 (MQ=255)                                                       cACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGc                                                                                              >  1:72450/1‑149 (MQ=255)                                                          gCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGtt                                                                                           >  1:282698/1‑149 (MQ=255)                                                          gCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGtt                                                                                           <  1:363818/149‑1 (MQ=255)                                                          gCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGtt                                                                                           >  1:51889/1‑149 (MQ=255)                                                            aGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTgg                                                                                         <  2:51889/149‑1 (MQ=255)                                                            aGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCAAAATCGCCCCGGCGTTTCCGTCGATATAAATCGTTTGTTGCTGCCACGGGGTAAGGGCACCAATATCCACACCACCCAGCGTTgg                                                                                         >  2:43128/1‑149 (MQ=255)                                                                 gTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGt                                                                                    <  2:75540/149‑1 (MQ=255)                                                                  tCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTCGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGtt                                                                                   <  1:190139/149‑1 (MQ=255)                                                                  tCCTCTACCCGGGCTTCTTGCTGATAAAAACCAGCTACGGCTTCCCCTGGCTCAACCCCAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGtt                                                                                   <  2:386712/149‑1 (MQ=255)                                                                    cTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTACCACGGAGTACGGGCATCAATATCCACACCAACCAGCGATGAAACGTTga                                                                                 >  1:110803/1‑149 (MQ=255)                                                                     tGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGACTGTGgaa                                                                                >  1:244294/1‑149 (MQ=255)                                                                     tGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTgaa                                                                                <  1:341691/149‑1 (MQ=255)                                                                     tGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTgaa                                                                                >  2:329350/1‑149 (MQ=255)                                                                     tGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTgaa                                                                                <  1:341751/149‑1 (MQ=255)                                                                      gTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTgaac                                                                               <  1:352368/149‑1 (MQ=255)                                                                       tACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTgaacg                                                                              >  1:186324/1‑149 (MQ=255)                                                                         cgcgGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTgaacgaa                                                                            <  1:318275/149‑1 (MQ=255)                                                                            gggCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTgaagccacgg                                                                         >  1:175661/1‑142 (MQ=255)                                                                            gggCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGATGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAATCAGCGTTGGAGTGTTGAACGAACgg                                                                         >  1:414506/1‑149 (MQ=255)                                                                              gCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGc                                                                       >  2:40803/1‑149 (MQ=255)                                                                               cttcttGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGGTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCa                                                                      >  1:226829/1‑149 (MQ=255)                                                                                   ttGCTGATAATAACGAGCTACGGCTTCCCCTGGCTAAACCACAATCGCCCCGGCGGTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGa                                                                  >  2:91142/1‑149 (MQ=255)                                                                                    tGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGAt                                                                 <  1:342709/149‑1 (MQ=255)                                                                                     gCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGGTc                                                                >  1:168709/1‑149 (MQ=255)                                                                                      cTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCa                                                               >  2:379655/1‑149 (MQ=255)                                                                                       tGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCAc                                                              <  1:40803/149‑1 (MQ=255)                                                                                       tGATAATAACGACCTACGGCTGCGCCGTGCTCAACCACAGTCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCAc                                                              <  2:390781/149‑1 (MQ=255)                                                                                        gATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCTTGTCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCAcc                                                             <  2:229545/149‑1 (MQ=255)                                                                                         ataataACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCg                                                            >  1:385893/1‑149 (MQ=255)                                                                                         ataataACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGCGTTGGGTTGAGTATCCACACCAACCAGCGTTGGAATGTTGAAAGACAGGGCAAGGAtacacg                                                            >  1:98525/1‑144 (MQ=255)                                                                                          taataaCGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCcac                                                                                                        >  1:240985/1‑104 (MQ=255)                                                                                          taataaCGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCcac                                                                                                        <  2:240985/104‑1 (MQ=255)                                                                                           aataaCGGGCTACGGCTTCCACTGGCTCAACCACAATCGCCCCGGCGGGGCCGTCGGTATACATCGTTTATTGCTGCCACGGAGTAAGGGCATCAATATCCACACCACCCAGAGTAGGAATGTTGAACTAACTGGCACGCATCCCCGtc                                                          >  2:27963/1‑148 (MQ=255)                                                                                               accaGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGGAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTAtgtg                                                      <  2:13148/146‑1 (MQ=255)                                                                                                 gggcgtcGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCCGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAg                                                    <  2:72450/143‑1 (MQ=255)                                                                                                    ccccGGCTCCCCCTGGCCCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCCTTTGTTGCTGCAACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAggtg                                                 <  2:137091/146‑1 (MQ=255)                                                                                                      aCGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGGggtggt                                               >  2:414439/1‑149 (MQ=255)                                                                                                      aCGGCTTCCCCTGGCTCAACCACAACCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGCTGCTGCCACGGAGTAAGGCCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAggtggt                                               <  2:388548/149‑1 (MQ=255)                                                                                                           ttCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGCGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTgccgc                                          >  1:59093/1‑149 (MQ=255)                                                                                                           ttCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTgccgc                                          >  2:284243/1‑149 (MQ=255)                                                                                                              cccTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATc                                                                <  2:343615/124‑1 (MQ=255)                                                                                                              cccTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATc                                                                >  1:343615/1‑124 (MQ=255)                                                                                                               ccTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTgccgc                                          <  2:50159/145‑1 (MQ=255)                                                                                                               ccTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTgccgc                                          >  1:50159/1‑145 (MQ=255)                                                                                                                cTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCGACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGCCGCCGCtt                                     >  1:376316/1‑149 (MQ=255)                                                                                                                     tCAACCCCAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGCCGCCGCTTTTGAg                                <  1:149360/149‑1 (MQ=255)                                                                                                                     tCAACCACAATCGGCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGCCGCCGCTTTTGAg                                <  2:158213/149‑1 (MQ=255)                                                                                                                     tCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGCCGCCGCTTTTGAg                                >  1:117997/1‑149 (MQ=255)                                                                                                                         ccACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGCATGTGAGGTGGTGCCGCCGCTTTTGAGcaac                            >  2:283683/1‑149 (MQ=255)                                                                                                                          cacaATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGCCGCCGCTTTTGAGcaaca                           >  2:256352/1‑149 (MQ=255)                                                                                                                          cacaATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGCCGCCGCTTTTGAGcaaca                           >  2:255801/1‑149 (MQ=255)                                                                                                                            caACCGCGCCCGGGTGGCCGTTGACATAACTCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGTCAAGGATCACCGTATGTGAGGTGGTGCCGCCGCTTTTGAGCAACAAt                         <  2:411721/149‑1 (MQ=255)                                                                                                                               tCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGCCGCCGCTTTTGAGCAACAATCCt                      <  1:284243/149‑1 (MQ=255)                                                                                                                                  ccccGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGCCGCCGCTTTTGAGCAACAATCCTTTg                   >  1:65063/1‑149 (MQ=255)                                                                                                                                    ccGGCTTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGAATGTGAGGTGGTGCCGCCGCTTTTGAGCAACAATCCTTTggg                 >  2:149177/1‑147 (MQ=255)                                                                                                                                    ccGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGCCGCCGCTTTTGAGCAACAATCCTTTGAg                 <  1:43798/149‑1 (MQ=255)                                                                                                                                         gTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGCCGCCGCTTTTGAGCAACAATCCTTTGAGGTGAt            >  2:369782/1‑149 (MQ=255)                                                                                                                                            gCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGCCGCCGCTTTTGAGCAACAATCCTTTGAGGTGAtttt         <  1:2956/149‑1 (MQ=255)                                                                                                                                             cagTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGCCGCCGCTTTTGAGCAACAATCCTTTGAGGTGAttttt        <  1:178905/147‑1 (MQ=255)                                                                                                                                                tCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGCCGCCGCTTTTGAGCAACAATCCTTTGAGGTGATTTTTATc     >  1:155670/1‑149 (MQ=255)                                                                                                                                                   atatAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGCCGCCGCTTTTGAGCAACAATCCTTTGAGGTGATTTTTATCCAg  >  2:94220/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TGCGGATACCGTCAGCGGTACGGGCTTGTTGGGTCAGCCAGACACGCTGTTGCTCACGCAGGGCGTCCTGTACGCGGGCTTCTTGCTGATAATAACGAGCTACGGCTTCCCCTGGCTCAACCACAATCGCCCCGGCGTTGCCGTCGATATAAATCGTTTGTTGCTGCCACGGAGTAAGGGCATCAATATCCACACCAACCAGCGTTGGAATGTTGAACGAACGGGCAAGGATCACCGTATGTGAGGTGGTGCCGCCGCTTTTGAGCAACAATCCTTTGAGGTGATTTTTATCCAG  >  NC_000913_3_pae_tpiA/4140997‑4141291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.