Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_pae_tpiA 1,456,944 Δ128,366 bp [paaE][ydeP] 116 genes

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_pae_tpiA 1456944 1585309 128366 28 [0] [0] 28 [paaE]–[ydeP] [paaE],paaF,paaG,paaH,paaI,paaJ,paaK,paaX,paaY,ynbG,ydbA,insD1,insC1,ydbA,insI1,ydbA,ydbC,ydbD,ynbA,ynbB,ynbC,ynbD,azoR,hrpA,ydcF,aldA,gapC,gapC,cybB,rydC,ydcA,hokB,mokB,sokB,trg,ydcI,ydcJ,opgD,ydcH,rimL,ydcK,tehA,tehB,ydcL,insP,insQ,ydcO,ydcN,ydcP,yncJ,hicA,hicB,ydcR,ydcS,ydcT,ydcU,ydcV,patD,yncL,ydcX,ydcY,ydcZ,mnaT,curA,mcbR,yncD,yncE,ansP,yncG,yncH,rhsE,ydcD,yncI,yncI,ydcC,pptA,yddH,nhoA,yddE,narV,narW,narY,narZ,narU,yddK,yddK,yddL,yddG,fdnG,fdnH,fdnI,yddM,adhP,maeA,sra,bdm,osmC,ddpF,ddpD,ddpC,ddpB,ddpA,ddpX,dosP,dosC,yddW,gadC,gadB,pqqL,yddB,yddA,ydeM,ydeN,ydeO,safA,[ydeP]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 14569430 (0.000)28 (1.130) 25/284 0.1 100% coding (514/1071 nt) paaE ring 1,2‑phenylacetyl‑CoA epoxidase, NAD(P)H oxidoreductase component
?NC_000913_3_pae_tpiA 1585310 = 0 (0.000)coding (1177/2280 nt) ydeP putative oxidoreductase

ATTACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTTACAGTTGTTGTGCATTTTCAGTCAGGAAACCCTCGACAGCGATCTGCTTCACGGGCGTATTGACGGTGAAAAATTACAGTCACTTGGGGCCTCGCTCATTAATTTTCGTCTTTATGATGAGGCATTTATTTG  >  NC_000913_3_pae_tpiA/1456799‑1457076
                                                                                                                                                |                                                                                                                                     
aTTACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaat                                                                                                                                   >  1:165297‑M1/1‑145 (MQ=255)
    cGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCCGCGTTcaatgcta                                                                                                                               >  2:241509‑M1/1‑141 (MQ=255)
     gCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttac                                                                                                                              >  2:254385‑M1/1‑140 (MQ=255)
       cAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacct                                                                                                                            >  2:384935‑M1/1‑138 (MQ=255)
                cGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaac                                                                                                                   <  1:253552‑M1/149‑21 (MQ=255)
                 ggttatCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaaca                                                                                                                  <  2:134667‑M1/147‑22 (MQ=255)
                  aTTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacag                                                                                                                 >  2:395276‑M1/1‑127 (MQ=255)
                               cTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagt                                                                                                    <  2:165297‑M1/149‑36 (MQ=255)
                                     aaaCCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagt                                                                                                    >  1:20586‑M1/1‑108 (MQ=255)
                                     aaaCCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagt                                                                                                    <  2:20586‑M1/143‑36 (MQ=255)
                                      aaCCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgta                                                                                             <  1:254385‑M1/149‑43 (MQ=255)
                                          gAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgtt                                                                                         >  2:419736‑M1/1‑103 (MQ=255)
                                                         ttCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttaccttt                                                                                                                          >  1:123198‑M1/1‑88 (MQ=255)
                                                         ttCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttaccttt                                                                                                                          <  2:123198‑M1/101‑14 (MQ=255)
                                                             cccTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgttcgtgc                                                                      >  1:399078‑M1/1‑84 (MQ=255)
                                                              ccTGATCTACGGCAACCGTACCAGCTCGAGCAGGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCATCGTTcaatgttacctttcatcaacagcagattgaccaggtgctgtacgttctgggtaccatgttcgtgct                                                                     <  1:149009‑M1/149‑67 (MQ=255)
                                                                 gATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgttcgtgctgag                                                                  <  1:64605‑M1/149‑70 (MQ=255)
                                                                              cGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACTAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgttcgtgctgagtgatccccattcc                                                     <  2:111892‑M1/149‑83 (MQ=255)
                                                                              cGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgttcgtgctgagtgatccccattcc                                                     >  1:77327‑M1/1‑67 (MQ=255)
                                                                              cGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgatcgtgctgagtgatccccattcc                                                     >  2:207721‑M1/1‑67 (MQ=255)
                                                                                               gatgTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgttcgtgctgagtgatccccattccgtaacagataatggtgc                                    <  1:395276‑M1/149‑100 (MQ=255)
                                                                                                   tttCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtactttctgggtaccatgttcgtgctgagtgatccccattccgtaacagataatggtgcgttc                                <  2:224522‑M1/149‑104 (MQ=255)
                                                                                                       gCCAGGCACTGGCAGACCTGAAAGACAAATATCCTAAACGTTcaatgttacctttcatcaacagcagattgaccattggctgtacgttctgggtaccatgttcgtgctgagtgatccccattccgtaacagataatggtgcgttcggca                            >  2:296276‑M1/1‑42 (MQ=255)
                                                                                                              aCTGGCAGACCTGAAAGACAAATATCCTCAGCGATcaatgttacctttcatcaacagcagattgaccagttgctctacgttctgggtaccatgttcgtgctgagtgatccccattccgtaacagataatggtgcgttcggccgcggcct                     >  2:75732‑M1/1‑35 (MQ=255)
                                                                                                               cTGGCAGACCTGAAAGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgtgtaccatgttcgtgctgagtgatccccattccggaatagataatggtgcgttcggcagcggcata                    >  1:216927‑M1/1‑34 (MQ=255)
                                                                                                                           aaaGACAAATATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgttcgggctgagtgagccccattccgtaacagataatggtgcgttcggcagcggcatatgcgtcagccag        >  2:319575‑M1/1‑22 (MQ=255)
                                                                                                                              gACAAATATCCTCAGCGTTtaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgttcgtgctgagtgatccccattccgtaacagataatggtgcgttcggcagcggcatatgcgtgagccagtgc     <  2:408966‑M1/149‑131 (MQ=255)
                                                                                                                                 aaaTATCCTCAGCGTTcaatgttacctttcatcaacagcagattgaccagttgctgtacgttctgggtaccatgttcgtgctgagtgatccccattccgtaacagataatggtgcgttcggcagcggcatatgcgtcagccagttcggc  >  2:348325‑M1/1‑16 (MQ=255)
                                                                                                                                                |                                                                                                                                     
ATTACGCCAATGCTGGCGATTATCGCCACCACTTTACAAACCGAGCCTGAAAGTCAGTTCACCCTGATCTACGGTAACCGTACCAGCCAGAGCATGATGTTTCGCCAGGCACTGGCAGACCTGAAAGACAAATATCCTCAGCGTTTACAGTTGTTGTGCATTTTCAGTCAGGAAACCCTCGACAGCGATCTGCTTCACGGGCGTATTGACGGTGAAAAATTACAGTCACTTGGGGCCTCGCTCATTAATTTTCGTCTTTATGATGAGGCATTTATTTG  >  NC_000913_3_pae_tpiA/1456799‑1457076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: