New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 169381267 (0.910)13 (0.180) 11/260 7.4 17.4% coding (452/1374 nt) uidB glucuronide transporter
?NC_000913_3_pae_tpiA = 1693839 58 (0.810)coding (425/1374 nt) uidB glucuronide transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAGCAGATGAAGTAAAGCACCATTCCGGCAATCGCCAGCACAATTGTCCAGAAATGGTATACCGACACCATCTCTTCCGGGCTGGAGTTCTTAATGCTCGGTCCTATCAGAAATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATCCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/1693661‑1693812
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATTGCCGCTTCATTGACCTTTGTCTGCCTGGCATTTCTGATAGGACCGAGCATTAAGAACTCCAGCCCGGAAGAGATGGTGTCGGTATACCATTTCTGGACAATTGTGCTGGCGATT  <  NC_000913_3_pae_tpiA/1693839‑1693691
                                                                                                                                                                                                                                                                                                             
GAAGCAGATGAAGTAAAGCACCATTCCGGCAATCGCCAGCACAATTGTCCAGAAATGGTATACCGACACCATCTCTTCCGGGCTGGAGTTCTTAATGCTCGGTCCTATCAGAAATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATCCC                                                                                                                                                         >  2:655219/1‑150
                                 CGCCAGCACAATTGTCCAGAAATGGTATACCGACACCATCTCTTCCGGGCTGGAGTTCTTAATGCTCGGTCCTATCAGAAATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATCCCACAATCCCGCGCCCGTCTGGGCGCGGCTCGTGG                                                                                                                        <  3:216068/150‑1
                                        ACAATTGTCCAGAAATGGTATACCGACACCATCTCTTCCGGGCTGGAGTTCTTAATGCTCGGTCCTATCAGAAATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATCCCACAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATTGCC                                                                                                                 >  4:201018/1‑150
                                                    AAATGGTATACCGACACCATCTCTTCCGGGCTGGAGTTCTTAATGCTCGGTCCTATCAGAAATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATCCCAC                                                                                                                                                       >  1:111737/1‑100
                                                    AAATGGTATACCGACACCATCTCTTCCGGGCTGGAGTTCTTAATGCTCGGTCCTATCAGAAATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATCCCAC                                                                                                                                                       <  2:111737/100‑1
                                                        GGTATACCGACACCATCTCTTCCGGGCTGGAGTTCTTAATGCTCGGTCCTATCAGAAATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATCCCACAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATTGCCGCTTCATTGACCTTTG                                                                                                 <  3:201018/150‑1
                                                             ACCGACACCATCTCTTCCGGGCTGGAGTTCTTAATGCTCGGTCCTATCAGAAATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATCCCACAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATT                                                                                                                    >  4:238620/1‑126
                                                             ACCGACACCATCTCTTCCGGGCTGGAGTTCTTAATGCTCGGTCCTATCAGAAATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATCCCACAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATT                                                                                                                    >  1:107643/1‑126
                                                             ACCGACACCATCTCTTCCGGGCTGGAGTTCTTAATGCTCGGTCCTATCAGAAATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATCCCACAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATT                                                                                                                    <  3:238620/126‑1
                                                             ACCGACACCATCTCTTCCGGGCTGGAGTTCTTAATGCTCGGTCCTATCAGAAATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATCCCACAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATT                                                                                                                    <  2:107643/126‑1
                                                                                     GAGTTCTTAATGCTCGGTCCTATCAGAAATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATCCCACAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATTG                                                                                                                   >  2:395922/1‑103
                                                                                     GAGTTCTTAATGCTCGGTCCTATCAGAAATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATCCCACAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATTG                                                                                                                   <  1:395922/103‑1
                                                                                           TTAATGCTCGGTCCTATCAGAAATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATCCCACGA‑GCCGCGCCCGTCTGGGCGCGGCTCGTGGGATTGCC                                                                                                                 >  2:152492/1‑98
                                                                                           TTAATGCTCGGTCCTATCAGAAATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATCCCACGA‑GCCGCGCCCGTCTGGGCGCGGCTCGTGGGATTGCC                                                                                                                 <  1:152492/98‑1
                                                                                                           TCAGAAATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATACCACAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATTGCCGCTTCATTGACCTTTGTCTGCCTGGCATTTCTGATAGGACCGAGCATTAAGAACTCCAGCCCGGAAG                                              >  4:138821/1‑150
                                                                                                                AATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATACCACAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATTGCCGCTTCATTGACCTTTGTCTGCCTGGCATTTCTGATAGGACCGAGCATTAAGAACTCCAGCCCGGAAGAGATG                                         <  3:138821/150‑1
                                                                                                                                                      ACAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATTGCCGCTTCATTGACCTTTGTCTGCCTGGCATTTCTGATAGGACCGAGCATTAAGAACTCCAGCCCGGAAGAGATGGTGTCGGTATACCATTTCTGGACAATTGTGCTGGCGAT   >  2:519509/1‑150
                                                                                                                                                      ACAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATTGCCGCTTCATTGACCTTTGTCTGCCTGGCATTTCTCATAGGACCGAGCATTAAGAACTGCAGCCCGGAAGAGATGGTGTCGGTATACCATTTCTGGACAATTGTGCTGGCGAT   >  3:486888/1‑150
                                                                                                                                                       CAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATTGCCGCTTCATTGACCTTTGTCTGCCTGGCATTTCTGATAGGACCGAGCATTAAGAACTCCAGCCCGGAAGAGATGGTGTCGGTATACCATTTCTGGACAATTGTGCTGGCGATT  >  2:232989/1‑150
                                                                                                                                                       CAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATTGCCGCTTCATTGACCTTTGTCTGCCTGGCATTTCTGATAGGACCGAGCATTAAGAACTCCAGCCCGGAAGAGATGGTGTCGGTATACCATTTCTGGACAATTGTGCTGGCGATT  >  2:232780/1‑150
                                                                                                                                                       CAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATTGCCGCTTCATTGACCTTTGTCTGCCTGGCATTTCTGATAGGACCGAGCATTAAGAACTCCAGCCCGGAAGAGATGGTGTCGGTATACCATTTCTGGACAATTGTGCTGGCGATT  >  2:798860/1‑150
                                                                                                                                                       CAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATTGCCGCTTCATTGACCTTTGTCTGCCTGGCATTTCTGATAGGACCGAGCATTAAGAACTCCAGCCCGGAAGAGATGGTGT                                     >  2:635532/1‑115
                                                                                                                                                       CAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATTGCCGCTTCATTGACCTTTGTCTGCCTGGCATTTCTGATAGGACCGAGCATTAAGAACTCCAGCCCGGAAGAGATGGTGT                                     <  1:635532/115‑1
                                                                                                                                                                                                                                                                                                             
GAAGCAGATGAAGTAAAGCACCATTCCGGCAATCGCCAGCACAATTGTCCAGAAATGGTATACCGACACCATCTCTTCCGGGCTGGAGTTCTTAATGCTCGGTCCTATCAGAAATGCCAGGCAGACAAAGGTCAATGAAGCGGCAATCCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/1693661‑1693812
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacAATCCCGCGCCCGTCTGGGCGCGGCTCGTGGGATTGCCGCTTCATTGACCTTTGTCTGCCTGGCATTTCTGATAGGACCGAGCATTAAGAACTCCAGCCCGGAAGAGATGGTGTCGGTATACCATTTCTGGACAATTGTGCTGGCGATT  <  NC_000913_3_pae_tpiA/1693839‑1693691

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.