| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1242835 | 36 (1.070) | 6 (0.190) | 5/268 | 3.6 | 15.0% | coding (246/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A |
| ? | NC_000913_3_pae_tpiA | = 1242840 | 34 (1.070) | coding (241/915 nt) | ldcA | murein tetrapeptide carboxypeptidase; LD‑carboxypeptidase A | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/1242682‑1242835‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccagtCGTTTACTGGCAGATATTGACTGGCAGGCACTGGTGGCTCGCCAACAACATGACCCGTTGCTCATTTGCGGACATAGCGATTTTACCGCCATTCAGTGCGGTCTTCTGGCGCATGGCAATGTCATCACCTTTAGCGGCCCCATGCT < NC_000913_3_pae_tpiA/1242840‑1242695 AAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAACCGCTATAGCCGGTACTGGGCATCGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGTCAGTCAATATCTGC < 2:279677/150‑1 AGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCA < 1:508854/150‑1 GCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTCGTTTACTGG > 1:302985/1‑150 gggcGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACAGCACTGTATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTCGTTTACTGGCAG < 1:463818/146‑1 TGGGGCGCCGAAAGGTGATGACATTGCCATCCGCTAGAAGACCGCGCTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTCGTTTACTGGCAG < 1:464060/150‑1 GCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGC < 1:442178/126‑1 GCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGC > 2:442178/1‑126 AGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTAGGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTCGTTTACTGGCAGATATTGACTGGC < 2:302985/150‑1 ATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTCGTTTACTGGCAGATA > 1:56370/1‑62 ATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGTCGTTTACTGGCAGATA < 2:56370/62‑1 TGCCAGTCGTTTACTGGCAGACATTGACTGGCAGGCACTGGTGGCTCGCCAACAACATGACCCGTTGCTCATTTGCGGACATAGCGATTTTACCGCCATTCAGTGCGGTCTTCTGGCGCATGGCAATGTCATCACCTTTAGCGGCCCCAT < 1:7230/150‑1 CCAGTCGTTTACTGGCAGATACTGACTGGCAGGCACTGGTGGCTCGCCAACAACATGACCCGTTGCTCATTTGCGGACATAGCGATTTTACCGCCATTCAGTGCGGTCTTCTGGCGCATGGCAATGTCATCACCTTTAGCGGCCCCATGC < 1:89655/150‑1 CAGTCGTTTACTGGCAGATATTGACTGGCAGGCACTGGTGGCTCGCCAACAACATGACCCGTTGCTCATTTGCGGACATAGCGATTTTACCGCCATTCAGTGCGGTCTTCTGGCGCATGGCAATGTCATCACCTTTAGCGGCCCCATGCT < 2:321833/150‑1 AAAGTTTGCTACCAGCATGGGGCCGCTAAAGGTGATGACATTGCCATGCGCCAGAAGACCGCACTGAATGGCGGTAAAATCGCTATGTCCGCAAATGAGCAACGGGTCATGTTGTTGGCGAGCCACCAGTGCCTGCCAGTCAATATCTGCCAGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/1242682‑1242835‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgccagtCGTTTACTGGCAGATATTGACTGGCAGGCACTGGTGGCTCGCCAACAACATGACCCGTTGCTCATTTGCGGACATAGCGATTTTACCGCCATTCAGTGCGGTCTTCTGGCGCATGGCAATGTCATCACCTTTAGCGGCCCCATGCT < NC_000913_3_pae_tpiA/1242840‑1242695 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |