New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 3921430	39 (1.160)	5 (0.160)	5/270	3.6	12.0%	coding (622/816 nt)	atpB	F0 sector of membrane‑bound ATP synthase, subunit a
	?	NC_000913_3_pae_tpiA	= 3921440	36 (1.120)					coding (612/816 nt)	atpB	F0 sector of membrane‑bound ATP synthase, subunit a
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/3921298‑3921430 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaaccAGTTTCACTCGGTTTGCGA  <  NC_000913_3_pae_tpiA/3921440‑3921422                                                                                                                                                          GCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCAGTTTCACTCGGTTTGC    <  2:485472/150‑1                              GCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCAGTTTCACTCGGTTTGCGA  <  1:207350/123‑1                              GCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACCAGTTTCACTCGGTTTGCGA  >  2:207350/1‑123                                                                                                   TCACCGGCATACATGTTACCGAACAGTCGCAAACCAGTTTCACTCGGTTTG     <  1:162807/51‑1                                                                                                   TCACCGGCATACATGTTACCGAACAGTCGCAAACCAGTTTCACTCGGTTTG     >  2:162807/1‑51                                                                                                                                                          GCAGCGTAATGATCAGGATGTGGAAAATGGCCCACGGCACATTCAGGATCCACTGTGACCACCACGGCAACAGACCAGCAATCAGAATGAAAATCAGCTCACCGGCATACATGTTACCGAACAGTCGCAAACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/3921298‑3921430 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caaaccAGTTTCACTCGGTTTGCGA  <  NC_000913_3_pae_tpiA/3921440‑3921422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.