New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3876102 =	41 (1.220)	5 (0.160)	5/262	3.5	12.5%	intergenic (+8/+38)	yidX/yidA	putative lipoprotein/sugar phosphate phosphatase
	?	NC_000913_3_pae_tpiA	3876133 =	32 (1.030)					intergenic (+39/+7)	yidX/yidA	putative lipoprotein/sugar phosphate phosphatase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGAATAGCGTTATCCATCGCCACACCGACGCCTGCATATTCAATCATTG  >  NC_000913_3_pae_tpiA/3875994‑3876276                                                                                                                                            |                                                                                                                                                ttCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTaa                                                                                                                                       >  1:299550/1‑150 (MQ=255)                    agcaTTACCGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCaa                                                                                                                    >  1:71292/1‑150 (MQ=255)                        ttACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCCCAATAGc                                                                                                                >  1:352558/1‑150 (MQ=255)                            tGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAac                                                                                                            <  2:88945/150‑1 (MQ=255)                            tGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAac                                                                                                            >  2:227032/1‑150 (MQ=255)                                      tGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCaa                                                                                                                    <  1:37044/132‑1 (MQ=255)                                      tGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCaa                                                                                                                    >  2:37044/1‑132 (MQ=255)                                      tGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCAt                                                                                                  >  2:55316/1‑150 (MQ=255)                                       gTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATc                                                                                                 >  2:551533/1‑150 (MQ=255)                                                gACATCATGACTGCACCGCAGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTGAAGCTGTTTGCCCGCTCGCAGATTAAATCAGCACATACTTCTCAATAACTAACGTCACGCCATCTTCAAGGtt                                                                                        >  2:502863/1‑150 (MQ=255)                                                   atcatTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGa                                                                                     <  2:71292/150‑1 (MQ=255)                                                        tACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTgg                                                                                <  2:88027/150‑1 (MQ=255)                                                         aCTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCTCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGt                                                                               <  1:83589/150‑1 (MQ=255)                                                                cGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAg                                                                        >  1:373002/1‑150 (MQ=255)                                                                 gCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGt                                                                       >  2:417037/1‑150 (MQ=255)                                                                   ggCAATGTATGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGTGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATGAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTc                                                                     <  2:241671/149‑1 (MQ=255)                                                                     cAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTCATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCATGGTTAGATTTGGTGACAAAGTTCGc                                                                   <  1:453776/150‑1 (MQ=255)                                                                     cAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGc                                                                   <  1:339207/150‑1 (MQ=255)                                                                       aTTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCa                                                                 >  2:111068/1‑150 (MQ=255)                                                                              gTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCATACGCGTTTATGCTGATTGCCCGCCCACAGATTGATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCCCTTCttt                                                          <  1:549173/150‑1 (MQ=255)                                                                                tGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACaaa                                                                         <  1:250067/133‑1 (MQ=255)                                                                                tGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACaaa                                                                         >  2:250067/1‑133 (MQ=255)                                                                                           tAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGTTGACAAAGTTCGCCACTTCTTTCACTTAAGGAATa                                             >  2:108724/1‑150 (MQ=255)                                                                                             aaCCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTCGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGCAGTAATAGc                                           >  2:392531/1‑150 (MQ=255)                                                                                             aaCCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGAATAGc                                           <  1:18346/150‑1 (MQ=255)                                                                                             aaCCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGAATAGc                                           <  1:417037/150‑1 (MQ=255)                                                                                               ccAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTCATTCAGGACATACTTGTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCTCTTCTTTCACTGAAGGAAtcacgt                                         >  1:501661/1‑145 (MQ=255)                                                                                                       cAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTGCGTTCACTGAAGGAATAGCGTTATCCATc                                 <  1:443416/150‑1 (MQ=255)                                                                                                                         ggttATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGAATAGCGTTAGCCATCGCCACACCGACGCCTGCa               >  1:25958/3‑150 (MQ=255)                                                                                                                             aTGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGAATAGCGTTATCCATCGCCACACCGACGCCTGCATAtt           <  1:55316/150‑1 (MQ=255)                                                                                                                             aTGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAAGAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGAATAGCGTTATCCATCGCCACACCGACGCCTGCATAtt           <  1:111068/150‑1 (MQ=255)                                                                                                                               gCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCCTAATCAAGGGGAGATTTGGTGACAGAGTCCGCCACTTCTTTCACTGACGGAATAGCGTTATCCATAGCCACACCGACGCCTGCATATTCa         >  1:292821/1‑150 (MQ=255)                                                                                                                                gcgTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCTATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGAATAGCGTTATCCATCGCCACACCGACGCCTGCATATTCaa        <  2:106706/148‑1 (MQ=255)                                                                                                                                      gcccgcccACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGAATAGCGTTATCCATCGCCACACCGACGCCTGCATATTCAATCATTg  >  2:184995/1‑150 (MQ=255)                                                                                                                                          gcccACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTc                                                         <  2:529797/91‑1 (MQ=255)                                                                                                                                          gcccACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTc                                                         >  1:529797/1‑91 (MQ=255)                                                                                                                                            |                                                                                                                                                TTCCGGATGGTGTTTCCGCAGCATTACTGCCAGTGACTGTTACGCTGGACATCATTACTGCACCGCTGCAATTTCTGGTTGTATATGCAGTAAACCAATAATCAGTAAGCGGGCAAACGCGTTTATGCTGTTTGCCCGCCCACAGATTAATTCAGCACATACTTCTCAATAGCAAACGCCACGCCATCTTCAAGGTTAGATTTGGTGACAAAGTTCGCCACTTCTTTCACTGAAGGAATAGCGTTATCCATCGCCACACCGACGCCTGCATATTCAATCATTG  >  NC_000913_3_pae_tpiA/3875994‑3876276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.