New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	1735255 =	43 (1.190)	6 (0.180)	5/260	4.1	13.1%	intergenic (+5/‑123)	mepH/sodB	murein DD‑endopeptidase, space‑maker hydrolase/superoxide dismutase, Fe
	?	NC_000913_3_pae_tpiA	1735283 =	40 (1.200)					intergenic (+33/‑95)	mepH/sodB	murein DD‑endopeptidase, space‑maker hydrolase/superoxide dismutase, Fe
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGGCGTGTATGTCGGCAACGGCAAATTTATTCAGTCACCGCGCACAGGTCAGGAAATTCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTACGTATGCAAATTAATAATAAAGGAGAGTAGCAATGTCATTCGAATTACCTGCACTAC  >  NC_000913_3_pae_tpiA/1735109‑1735402                                                                                                                                                   |                                                                                                                                                    cGGCGTGTATGTCGGCAACGGCAAATTTATTCAGTCACCGCGCACAGGTCAGGAAATTCAAATCACTTCTCTCAGTGAAGACTACTGGCGTCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTa                                                                                                                                                   <  1:410679/149‑1 (MQ=255)   gCGTGTATGTCGGCAACGGCAAATTTATTCAGTCACCGCGCACAGGTCAGGAAATTCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTAcc                                                                                                                                                 <  2:264793/149‑1 (MQ=255)      tgtATGTCGGCAACGGCAAATTTATTCAGTCACCGCGCACAGGTCAGGAAATTCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCtg                                                                                                                                              <  1:290232/149‑1 (MQ=255)               gcaacggcaaATTTATTCAGTCACCGCGCACAGGTCAGGAAATTCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACgg                                                                                                                                     >  1:171482/1‑149 (MQ=255)                     gcaaATTTATTCAGTCACCGCGCACAGGTCAGGAAATTCAAATCACTTCTATCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTTGAGGGCGAGCGCCAAAAAAACTACGCTAAACCTTTACCCTGTTGTTACGGCAACAg                                                                                                                               >  1:440069/1‑149 (MQ=255)                          tttATTCAGTCACCGCGCACAGGTCAGGAAATTCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCACCAGGGCaa                                                                                                                          >  2:431497/1‑149 (MQ=255)                           ttATTCAGTCACCGCGCACAGGTCAGGAAATTCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAg                                                                                                                         >  1:356755/1‑149 (MQ=255)                                cAGTCACCGCGCACAGGTCAGGAAATTCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCAt                                                                                                                    <  2:447404/149‑1 (MQ=255)                                     cccGCGCACAGGTCAGGAAATTCAAATCACTTCTCTCAGTGAAGGCTACTGGCAGCGCCACTAGGTTGGCGCTCGTCGGGTCGTGACGCCAGAAACAGTTCGCTAAGACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCtttt                                                                                                               <  1:91452/148‑1 (MQ=255)                                     aCCGCGCACAGGTCAGGAAATTCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAACCTTTACCCTGTTGTTACGGCACCAGGGTAATTTCATCtttt                                                                                                               >  2:574064/1‑149 (MQ=255)                                            acaGGTCAGGAAATTCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCAc                                                                                                        >  1:470648/1‑149 (MQ=255)                                                gTCAGGAAATTCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCAGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCttt                                                                                                    >  2:561666/1‑149 (MQ=255)                                                 tCAGGAAATTCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCtttt                                                                                                   <  2:144021/149‑1 (MQ=255)                                                     gAAATTCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCCCCTTTTAAtt                                                                                               >  1:73585/1‑149 (MQ=255)                                                     gAAATTCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACGTTTTAAtt                                                                                               >  1:179842/1‑149 (MQ=255)                                                      aaaTTCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCAcc                                                                                                       >  2:285508/1‑140 (MQ=255)                                                      aaaTTCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCAcc                                                                                                       <  1:285508/140‑1 (MQ=255)                                                         ttCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCTACTTGGTAGGTTCATCTTTTGTCTCACCTTTTAATTTGCt                                                                                           >  1:335972/1‑149 (MQ=255)                                                          tCAAATCACTTCTCTCAGGGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACCCTTCGCTAAAACTTTACCCTCTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTa                                                                                          <  2:424126/149‑1 (MQ=255)                                                             aaTCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTTACTTTTTAATTTGCTTccc                                                                                       >  2:418733/1‑149 (MQ=255)                                                              attccTTCTCTCAGTGAAGGCTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCt                                                                                      <  2:164183/145‑1 (MQ=255)                                                              aTCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCt                                                                                      <  1:362432/149‑1 (MQ=255)                                                                 aCTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATc                                                                                   >  2:63336/1‑149 (MQ=255)                                                                   ttCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCGGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATcct                                                                                 >  2:81702/1‑148 (MQ=255)                                                                       ctcAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACg                                                                             >  2:151322/1‑149 (MQ=255)                                                                               aGACTACTGGCAGCGCCACTATGTTCGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATaa                                                                     <  2:495292/149‑1 (MQ=255)                                                                                   tactTGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCt                                                                 <  1:320859/149‑1 (MQ=255)                                                                                      tGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTAtt                                                              <  2:470648/149‑1 (MQ=255)                                                                                      tGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTAtt                                                              >  1:579683/1‑149 (MQ=255)                                                                                         cAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTa                                                           <  1:561666/149‑1 (MQ=255)                                                                                          aGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCACAGACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTAc                                                          >  1:24836/1‑149 (MQ=255)                                                                                                  catagtGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTACGTATGCaa                                                  >  2:88590/6‑149 (MQ=255)                                                                                                   aTGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTACGTATGCaaa                                                 <  2:171482/149‑1 (MQ=255)                                                                                                    tGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCCCAATAAGGCTATTGTACGTAGGCaact                                                >  1:156657/1‑147 (MQ=255)                                                                                                      gtGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTACGTATGCAAATta                                              <  1:88590/148‑1 (MQ=255)                                                                                                         gcacTCGGCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTCACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAACTTGCTACCCTATCCATACGCACAATAAGGCTATTGTACGTATGCAAATtaata                                           <  1:418733/146‑1 (MQ=255)                                                                                                              cgtcgGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTACGTATGCAAATTAATAATaaa                                      <  1:265751/149‑1 (MQ=255)                                                                                                                 cgGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTACGTATGCAAATTAATAATAAAGga                                   <  1:520346/149‑1 (MQ=255)                                                                                                                                 acacacTTCGCTAAAACTTTCCCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCCTACGCACAATAAGGCTATTGTACGTATGCAAATTAATAATAAAGGAGAGTCGCAATGTCAtt                   <  1:391811/147‑1 (MQ=255)                                                                                                                                  aaCACTTCTCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTACGTATGCAAATTAATAATAAAGGAGAGTAGCAATGTCATTc                  <  1:81702/149‑1 (MQ=255)                                                                                                                                       ttCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTACGTATGCAAATTAATAATAAAGGAGAGTAGCAATGTCATTCGAAtt             >  1:614098/1‑149 (MQ=255)                                                                                                                                       ttCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTATCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTACGTATGCAAATTAATAATACAGGAGGGTCGCAATGTCATTCAAAtt             >  2:618517/1‑149 (MQ=255)                                                                                                                                                  tttACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTACGTATGCAAATTAATAATAAAGGAGAGTAGCAATGTCATTCGAATTACCTGCACTAc  <  1:63336/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    CGGCGTGTATGTCGGCAACGGCAAATTTATTCAGTCACCGCGCACAGGTCAGGAAATTCAAATCACTTCTCTCAGTGAAGACTACTGGCAGCGCCACTATGTTGGCGCTCGTCGGGTAATGACCCCAAAAACACTTCGCTAAAACTTTACCCTGTTGTTACGGCAACAGGGTAAGTTCATCTTTTGTCTCACCTTTTAATTTGCTACCCTATCCATACGCACAATAAGGCTATTGTACGTATGCAAATTAATAATAAAGGAGAGTAGCAATGTCATTCGAATTACCTGCACTAC  >  NC_000913_3_pae_tpiA/1735109‑1735402

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.