New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3920240 =	57 (1.220)	4 (0.090)	4/266	6.1	7.0%	coding (164/534 nt)	atpH	F1 sector of membrane‑bound ATP synthase, delta subunit
	?	NC_000913_3_pae_tpiA	3920260 =	53 (1.200)					coding (144/534 nt)	atpH	F1 sector of membrane‑bound ATP synthase, delta subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTATTACGGTAGCTCGCCCCTACGCCAAAGCAGCTTTTGACTTTGCCGTCGAACACCAAAGTGTAGAACGCTGGCAGGACATGCTGGCGTTTGCCGCCGAGGTAACCAAAAACGAACAAATGGCAGAGCTTCTCTCTGGCGCGCTTGCGCCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/3920394‑3920240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccagaGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATC  >  NC_000913_3_pae_tpiA/3920260‑3920404                                                                                                                                                                                                                                                                                                              TTTATTACGGTAGCTCGCCCCTACGCCAAAGCAGCTTTTGACTTTGCCGTCGAACACCAAAGTGTAGAACGCTGGCAGGACATGCTGGCGTTTGCCGCCGAGGTAACCAAAAACGAACAAATGGCAGAGCTTCTCTCTGGCGCGCTTGC                                                                                                                                                         >  2:530178/1‑149     cTACGGTAGGTCCGCCCCACGCCAAAGCAGCTTTTGACTTTGCCGTCGAACACCAAAGTGTAGAACGCTGGCAGGACATGCTGGCCTTTGTCCCCGCGGTCAGCATAAACGTACAAATGGCAGAGCTTCTCTCTGGCGCGCTTGCGCCA                                                                                                                                                     <  2:343524/148‑1      TACGGTAGCTCGCCCCTACGCCAAAGCAGCTTTTGACTTTGCCGTCGAACACCAAAGTGTAGAACGCTGGCAGGACATGCTGGCGTTTGCCGCCGAGGTAACCAAAAACGAACAAATGGCAGAGCTTCTCTCTGGCGCGCTTGCGCCAG                                                                                                                                                    <  2:452206/149‑1                                                                                                                    AACAAATGGCAGAGCTTCTCTCTGGCGCGCTTGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTG                                      >  2:582380/1‑149                                                                                                                        AATGGCAGAGCTTCTCTCTGGCGCGCTTGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTG                                                                     >  1:26747/1‑114                                                                                                                        AATGGCAGAGCTTCTCTCTGGCGCGCTTGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTG                                                                     <  2:26747/114‑1                                                                                                                                     CTCTCTGGCGCGCTTGCGCCAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCgcc                     >  1:260670/1‑146                                                                                                                                                    GCGCCAGAGAGAAGCTCTGCCATTTGCTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGA      <  1:13334/149‑1                                                                                                                                                        CAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATC  <  1:500146/149‑1                                                                                                                                                        CAGAGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATATCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATC  <  2:712324/149‑1                                                                                                                                                                                                                                                                                                              TTTATTACGGTAGCTCGCCCCTACGCCAAAGCAGCTTTTGACTTTGCCGTCGAACACCAAAGTGTAGAACGCTGGCAGGACATGCTGGCGTTTGCCGCCGAGGTAACCAAAAACGAACAAATGGCAGAGCTTCTCTCTGGCGCGCTTGCGCCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/3920394‑3920240 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgccagaGAGAAGCTCTGCCATTTGTTCGTTTTTGGTTACCTCGGCGGCAAACGCCAGCATGTCCTGCCAGCGTTCTACACTTTGGTGTTCGACGGCAAAGTCAAAAGCTGCTTTGGCGTAGGGGCGAGCTACCGTAATAAATTCAGACATC  >  NC_000913_3_pae_tpiA/3920260‑3920404

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.