New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	= 2662450	35 (0.940)	4 (0.110)	4/266	4.7	10.3%	noncoding (142/266 nt)	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
	?	NC_000913_3_pae_tpiA	= 2662574	NA (NA)					noncoding (266/266 nt)	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTA  >  NC_000913_3_pae_tpiA/2662305‑2662598                                                                                                                                                  |                                                                                                                                                     tgttgtCGGATGCGGCGTGAACGCCATATCCGCCCTGGCGTTATATACGTTGGAGGGCTGGTGGTACGCAGTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTCTCCTATAGGcc                                                                                                                                                   >  1:517135/1‑149 (MQ=14)  gttgtCGGGTGAGGCGGGAACGCCATATCCGCCTTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCt                                                                                                                                                  <  2:164267/149‑1 (MQ=255)  gttgtCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCt                                                                                                                                                  >  1:575103/1‑149 (MQ=255)      tCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTATACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATa                                                                                                                                              >  2:679641/1‑149 (MQ=255)             cggcgTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCa                                                                                                                                       <  1:506381/149‑1 (MQ=255)                             tCCGCCCTGGGGTTCTGTGGTCTGTAGGCCTGATAAGGCGCATTACGCGTCGCATTAGGTAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTACGGTTCTGTTCTTTGTAGGCCTGATTAGATGCATTACGCGTCGCATCAg                                                                                                                       <  2:415105/149‑1 (MQ=11)                                  ccTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAAc                                                                                                                  >  1:525208/1‑149 (MQ=37)                                   cTGGGGTTCTGTACTCTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTGCTGTTCACTGTAGGCCTGATAAGCCGCATTACGCGTTGCATCAGGCAACg                                                                                                                 <  1:573985/149‑1 (MQ=255)                                         ttCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTc                                                                                                           <  2:298578/149‑1 (MQ=32)                                            tGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGAc                                                                                                                                          >  1:38698/1‑115 (MQ=32)                                             gTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAg                                                                                                                                            <  2:248867/112‑1 (MQ=32)                                             gTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAg                                                                                                                                            >  1:248867/1‑112 (MQ=32)                                              gacacTGTAGGCCTGATAAGACGCGTTACGCGTCGCATCAGGAAACGGCTGTCAAATGCGGCGTAAACGCCTTATCCGAACTACAGTTCTGGTCACTGTAGGGCTGGTGAGACGCATTACCCGCCGCATCCGGCCACAGCTGCCggcac                                                                                                      >  2:78553/2‑146 (MQ=11)                                                  cTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATgcggc                                                                                                  <  1:457228/149‑1 (MQ=38)                                                          cTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGc                                                                                          >  2:225461/1‑149 (MQ=255)                                                                         gcgcgGCGCACCTGGCAACGGCTGTCGGATGCGGCGTGAACGCCATATCCGGCCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACg                                                                           <  2:78433/148‑1 (MQ=14)                                                                          cgcgTCGGATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACgg                                                                          <  1:300739/149‑1 (MQ=255)                                                                          cgcgTCGCATCAGGCAACGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACgg                                                                          <  2:524209/149‑1 (MQ=255)                                                                           gcgTTGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATCAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGt                                                                         <  1:574754/149‑1 (MQ=255)                                                                                 ggtgaGGCAGCCGCCGTCGGACGCGGCGCGAACGCCGTTCCCGACCGTGGGTTCTGTTCACTGTAGGCCTGATACGACGCATTTCGCGTCGCATCAGGCAACGGTTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGtt                                                                   <  2:297295/145‑1 (MQ=11)                                                                                  aTCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTc                                                                  <  1:64008/149‑1 (MQ=255)                                                                                   tCAGGCAACGGCTGGCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCa                                                                 <  1:423379/149‑1 (MQ=255)                                                                                    cAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCAc                                                                <  1:679641/149‑1 (MQ=255)                                                                                         aaCGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAg                                                           <  1:32957/149‑1 (MQ=255)                                                                                                 tgggAGGCGGCGTGAACGCCTTTTCCGACCGACGTTTCTGGTGACTGTAGGCCTTATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGGCGCTGGTACGCTTTATCCGACCTACGGTTCTGTTCACTGTCGGCCTGATa                                                   >  2:444848/3‑149 (MQ=14)                                                                                                              gaatcccTTATCCGACCGACGGTTCTGTTCACTGTAGCCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTAcgc                                      <  1:646752/144‑1 (MQ=255)                                                                                                                    cTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATCACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAAAGCCTTATCCGCCCTACGGTTCTGTTCACTGTAGGCCGGATAAGACGCATTACGCGTCGCa                                >  1:60923/1‑149 (MQ=255)                                                                                                                        gccGACCTACGGTTCTGTCCACTGTAGGCGTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTCCGAGTCGCATCAg                            <  2:534896/148‑1 (MQ=255)                                                                                                                           gACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGTCGCGGCGGGAACCCCTTTTCTGCCCTACGATTCTGTCCAGTGTCGGCCTGATAAGATGCATTACGCGTCCCTTCAGGcc                         >  2:413950/1‑148 (MQ=11)                                                                                                                                aCGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGc                    >  1:472828/1‑149 (MQ=34)                                                                                                                                    ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGcc                                                                                         <  2:98234/76‑1 (MQ=35)                                                                                                                                    ttCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGcc                                                                                         >  1:98234/1‑76 (MQ=35)                                                                                                                                       tGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGAc                                               <  2:38698/115‑1 (MQ=32)                                                                                                                                        gTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTc            <  2:687281/149‑1 (MQ=35)                                                                                                                                        gTTCACTGTAGGCCTGATAACACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACGGTAGGCCTCATAAGACCCATTACACGTCCCATCATGCCACGCCTGttgctc            >  2:222732/1‑145 (MQ=11)                                                                                                                                         gtCACTGTAGGCCTGAGAAGACGCATTACGCGGTGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCg           <  2:184078/148‑1 (MQ=255)                                                                                                                                              tGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCtt      >  2:442941/1‑149 (MQ=38)                                                                                                                                              tGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCtt      >  2:42838/1‑149 (MQ=38)                                                                                                                                                  ggCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTa  <  1:42838/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     TGTTGTCGGATGCGGCGTGAACGCCATATCCGCCCTGGGGTTCTGTACACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTTATTCGGCCTTGTTA  >  NC_000913_3_pae_tpiA/2662305‑2662598

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.