New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 3220891NA (NA)7 (0.200) 6/256 3.7 NA noncoding (12/31 nt) REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913_3_pae_tpiA = 3220898 NA (NA)noncoding (19/31 nt) REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences
Rejected: Coverage evenness skew score above cutoff.

TCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTTCGCTTTTTGCA  >  NC_000913_3_pae_tpiA/3220767‑3221042
                                                                                                                                   |                                                                                                                                                
tCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGCCGATACGACGTCGCCATCCGATCtttt                                                                                                                                 >  2:371324/1‑149 (MQ=255)
 ccGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGACATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCttttt                                                                                                                                <  1:55954/149‑1 (MQ=255)
    cATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTtata                                                                                                                             <  1:542269/149‑1 (MQ=255)
       tGAACCGCCACTGACACTGGCCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGAGATACGAAGTCGCCATCCGATCTTTTTATacgt                                                                                                                          <  2:344801/149‑2 (MQ=255)
                      actgacCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCACCATCCGATCTTTTTATACGCCCCGTACGCCCGCAg                                                                                                           >  2:190236/1‑149 (MQ=255)
                         gacCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGca                                                                                                        >  1:560404/1‑149 (MQ=255)
                             aTTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGcatcat                                                                                                    >  1:261172/1‑149 (MQ=255)
                                    aGTGTGAACTGGTGATCAAAGGGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGGCGCCATCCGATCTTTTTATACGACGCGTACGCTCGCAGGCATCATCCGCTcc                                                                                             <  2:345969/149‑1 (MQ=255)
                                      tgggAACTGGTGAGCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTAGACGACGCGTACGCCCGCAGGCATCATCCGCTCCgg                                                                                           <  2:119188/146‑1 (MQ=255)
                                        tgAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCg                                                                                         >  1:648183/1‑149 (MQ=255)
                                         gAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCgg                                                                                        >  1:214035/1‑148 (MQ=255)
                                           aCTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTATCGAAGAAGCGTAATATCAAATCGGATGGCGCTCCGACGTAGCCGTCCGATATTCCTATGAGACGCGTATGCCCGCAGGCATCCTCCGCTCCGGCGTTa                                                                                      >  1:93915/1‑149 (MQ=255)
                                               gTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCCTTAACAg                                                                                  >  2:637489/1‑149 (MQ=255)
                                                  aTCACAGCAGCGCGTAAGGCGCTGGCGGCCAAGCGAGTAAGTGACAAAGAAGGGTAAAAACAAATCGGATGGCGATACGACGTGGCCATCCGATCTTTTTATACGACACGTACGCCCGCAGCCATCGTCCCCTCCGCCGTTAACAGCAc                                                                               >  2:322157/1‑149 (MQ=255)
                                                          cgcgcGTGAGGCGCTGGCGGCCAGGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCAc                                                                       <  1:2351/148‑1 (MQ=255)
                                                           gcgcGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACt                                                                      >  1:377640/1‑149 (MQ=255)
                                                              cgTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACCCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGcc                                                                   >  1:641548/1‑149 (MQ=255)
                                                                tAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGt                                                                 >  2:66860/1‑149 (MQ=255)
                                                                  aGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCa                                                               <  1:561174/149‑1 (MQ=255)
                                                                   ggCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCAt                                                              <  1:66860/149‑1 (MQ=255)
                                                                            ggcCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTACCGTCATCGGTTTCCg                                                     <  2:560404/149‑1 (MQ=255)
                                                                                    gAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTCACCGCACGCTTTCACTGCCGGCATCGGGTTCCGCACacaac                                             >  1:286261/1‑149 (MQ=255)
                                                                                       caaGGGTAGAAGAAGCGTAAGATCAAATCGGAGGGCGATACGACGTCGCCCTTCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAgc                                          <  2:580409/148‑1 (MQ=255)
                                                                                         aGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCCCATACAACAgcat                                        <  2:261172/149‑1 (MQ=255)
                                                                                           tgtCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAccatgc                                      >  2:659565/1‑149 (MQ=255)
                                                                                             tCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAgcatgcat                                    >  2:40382/1‑149 (MQ=255)
                                                                                                aagaagCGTAATATCAAATCGGATGGCGATACGGCGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTcc                                 >  1:191605/1‑149 (MQ=255)
                                                                                                       gTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGgtt                          >  1:455959/1‑149 (MQ=255)
                                                                                                             tCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTcaccac                    >  1:366524/1‑149 (MQ=255)
                                                                                                                aaTCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCa                 >  2:516128/1‑149 (MQ=255)
                                                                                                                     gATGGCGATACGACGTTGCCATCCGATCTTTTTATACGACGTGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTTc            <  1:609418/149‑1 (MQ=255)
                                                                                                                     gATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTTc            <  1:371324/149‑1 (MQ=255)
                                                                                                                               cgacgTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCCTAGGCGGCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTTCGCTTTTTGCa  <  1:659565/149‑1 (MQ=255)
                                                                                                                                   |                                                                                                                                                
TCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTCCGACGTTTCACCACGCATTTTCGCTTTTTGCA  >  NC_000913_3_pae_tpiA/3220767‑3221042

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.