New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA 4325722 =NA (NA)4 (0.110) 4/272 4.8 9.1% noncoding (5/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
?NC_000913_3_pae_tpiA 4326154 = 40 (1.150)noncoding (437/583 nt) REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGC  >  NC_000913_3_pae_tpiA/4326011‑4326296
                                                                                                                                               |                                                                                                                                              
ggtaTTTGGAGGCCTGATAAGACGCGCAAGCGTCGCATCACGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCgg                                                                                                                                           <  1:336771/146‑1 (MQ=255)
 gAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAACCGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGCTACAACGCGCAAGCGTCGCATCAGGCAGTCGGc                                                                                                                                          >  2:179779/1‑149 (MQ=255)
      tGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGt                                                                                                                                     <  1:373244/149‑1 (MQ=37)
          ggCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGcc                                                                                                                                 >  2:355877/1‑149 (MQ=38)
                  aaGACGCGCAAGCGTCGCATCAGGCAGTTGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAg                                                                                                                                               <  1:359724/127‑1 (MQ=11)
                   aGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATgcggc                                                                                                                        >  2:611237/1‑149 (MQ=38)
                    gACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATgcggcg                                                                                                                       >  1:113019/1‑149 (MQ=38)
                                            gTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGa                                                                                               <  2:271295/149‑1 (MQ=35)
                                                  aCTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGCCGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTACCCGGCCTACGGAggatac                                                                                         >  2:383899/1‑145 (MQ=11)
                                                     gTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCggg                                                                                      <  1:97054/149‑1 (MQ=32)
                                                                         tgCCTCATCCGGCCTAGGGATGGTGCGGGAATTTGTAGGCCTGATAAGACGTGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGa                                                                  <  2:637122/148‑1 (MQ=255)
                                                                            cTTGTCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGAcgc                                                               <  2:473764/149‑1 (MQ=17)
                                                                            cTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGc                                                                                         >  1:362935/1‑123 (MQ=32)
                                                                                   ggCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCg                                                                                        <  2:76119/117‑1 (MQ=33)
                                                                                            aGGGTGCGGGACGTTGTAGGCCTGATAAGTCGGGCAAGTGTCGCATCAGGCAGTCGGCACTGTTGCCGGATGCGGCGTAAACGCCATTTTCGGCCTAACGAGGGTTCTGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAg                                               <  1:635790/149‑1 (MQ=11)
                                                                                             ggggGCGGGAACTTGGAGGCCTGATAAGACGCGCGAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAgg                                              <  2:569788/149‑1 (MQ=255)
                                                                                                  cGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGAGAAGACGCGCAAGCGTCGCATCAGGCATCt                                         <  1:480088/149‑1 (MQ=25)
                                                                                                   gggAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTg                                        >  1:498513/1‑149 (MQ=35)
                                                                                                       aTTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGTCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCAACGGAGGGTGCGGGGATTTGTCGGCCTGCTAAGAAGCGCAAGCCACGAAGCAGGCATCTGGGAc                                    >  1:201512/1‑149 (MQ=11)
                                                                                                               gCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGcc                                                                          <  1:612951/103‑1 (MQ=32)
                                                                                                               gCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGcc                                                                          >  2:612956/1‑103 (MQ=32)
                                                                                                               gCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGcc                                                                          >  2:612951/1‑103 (MQ=32)
                                                                                                               gCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGcc                                                                          <  1:612956/103‑1 (MQ=33)
                                                                                                                 cTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCCGGCAACg                                  >  2:217017/1‑141 (MQ=25)
                                                                                                                 cTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCCGGCAACg                                  <  1:217017/141‑1 (MQ=21)
                                                                                                                 cTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGACCCGTTGCCGGATGCGGCGTCACGGCCTTAGCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGa                          >  2:236443/1‑149 (MQ=14)
                                                                                                                  tgtaaaGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCCGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCCGGCAACGGTGCCAGAt                         <  1:44598/145‑1 (MQ=11)
                                                                                                                   gATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATg                        <  1:541437/149‑1 (MQ=255)
                                                                                                                     tAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAg                                                                                              <  1:272569/77‑1 (MQ=31)
                                                                                                                     tAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAg                                                                                              >  2:272569/1‑77 (MQ=31)
                                                                                                                         ccgcgCAATCGTCGGATCAGGCAGTGGGCACGGGTGCTGGATGCGGAGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGgcgc                  <  1:86951/148‑1 (MQ=11)
                                                                                                                         aCGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGgcgc                  >  1:494504/1‑149 (MQ=255)
                                                                                                                         aCGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGGGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGgcgc                  >  1:25884/1‑149 (MQ=255)
                                                                                                                         aCGCGCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAACCGCGCAAGCGTCGCATCAGGCAGCTGGCACCGTTGCCGGATgcggagt                  >  2:458933/1‑146 (MQ=1)
                                                                                                                          cgcgCAAGCGTCGCATCAGGCAGTCGGCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGcgcg                 <  2:571730/149‑1 (MQ=38)
                                                                                                                           gcgcGAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCTGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGa                <  1:67304/149‑1 (MQ=255)
                                                                                                                               aaGCGTCGCATCAGGCAGTTGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAgcgc            <  1:64111/149‑1 (MQ=255)
                                                                                                                                    tCGCATGAGGCAGCCGGCACCGGTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATGTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTAt       <  2:633837/149‑1 (MQ=255)
                                                                                                                                    tCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTAt       <  2:631486/149‑1 (MQ=255)
                                                                                                                                       cATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCAGATGAGGAGCGAGCGCCTTATcgg    >  2:30559/1‑147 (MQ=255)
                                                                                                                                         tCAGGCAGGCGGCACTGTTGCCGGATGCGGCGGAAACGCCATATCCGGCCTGCGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGc  <  2:47133/149‑1 (MQ=14)
                                                                                                                                             gCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATc                                                 <  1:2812/98‑1 (MQ=34)
                                                                                                                                               |                                                                                                                                              
GGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTTGGCACTGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCATCTGGCACCGTTGCCGGATGCGGCGCGAGCGCCTTATCCGGC  >  NC_000913_3_pae_tpiA/4326011‑4326296

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.