| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 1207805 | 6 (0.100) | 43 (0.810) | 39/258 | 0.4 | 83.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913_3_pae_tpiA | = 1209602 | 12 (0.230) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
GCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/1207643‑1207805‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggtttgggagaaggCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGATTTACG < NC_000913_3_pae_tpiA/1209602‑1209456 GCAGCGTGGTGGAGGCAGCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTT < 1:600926/149‑1 GGTTGAGGCATCCGGTGCCAGCCTTGAGAAGGGTCGGCACGACCAGTTAGTTACAGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGG < 1:313590/149‑1 GTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTACAAAAGGCTCTCAAAAACCATGGTTTGGG > 1:183408/1‑149 TGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGA < 1:473458/149‑1 AGGCTTCCGGTGCCAGCCTGGAGATGGGGCGGCACTACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAA < 1:144664/149‑1 GCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG < 2:880564/149‑1 ATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGGTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCACACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCT > 2:912199/1‑149 TCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTC < 2:142221/149‑1 tCGGTGCCAGCTTGGAGAAGGGGTGGCACGACTATTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGTAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCGCT < 1:418260/148‑1 gGGTGCCAGCCTTGAGAAGGGGNTGCNCGACCGGTTCCTTCCAGAAATGCGCGCGCTGCTGTTAAGCCGCAAGACTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTG < 1:864165/148‑1 CGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGCCGATATCAAATCGGATGGCACTTTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTG > 2:896645/1‑149 CAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGAACTTCGCGCGCTGGTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTAC < 1:328015/149‑1 ggtCTGGATAAGGGGCGGAACGACCAGTTACTTACCGCATTTCGCGCGCTGCTGTTAAGCCGGAAGAATCCGTTTGGCGAGATCACATCGGATGGCACTGTGCAAACGGCTCTCGAAATCCTTGGTTTGGGAGAAGGCTCTGCATTACC < 2:927776/146‑1 CCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGTGAAAAGGCTCTGCATTACCTG > 2:777419/1‑149 AGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGACTGGCGTGGTTTGGGAGAAGGGCCTGCATTACCTGTTGGT < 2:700447/149‑1 GACCAGTTACTTACCGCATTTCGCGCGCTGGTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTG < 1:571378/149‑1 TTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTC > 1:945846/1‑149 TACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGCAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCA > 2:342466/1‑149 CGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTCCCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTC > 1:515228/1‑149 CGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGATTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTC > 1:98136/1‑149 CGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGCTGCGCGATATCAAATCGGATGCCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGTTGT‑CCCGGTTCCGTGGCCCTCAGCCACcc > 2:270773/1‑147 CACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGATCCGTGGACTTCAGCCACTCCG > 1:887540/1‑149 GCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCT > 1:567148/1‑149 CTGCTGTTAAGCCGGAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTG < 2:235850/149‑1 TGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGC > 2:1002318/1‑123 TGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGC < 1:1002318/123‑1 GCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCACACGGCTCTCGAAAAACTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGC < 2:789405/149‑1 CTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCT > 1:868807/1‑149 CTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCT > 1:38229/1‑149 TAAGCCGCAAGAATCCGTTTGGCGATATCAAATCCGATGGCACTGTGCAACCGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAA < 1:660836/149‑1 cggctGAATCCGTTGGGGGATGTCAAATTGGATGGCACTGTGCAAAAGGCTGTCGAAAACCTTGGTTTGGGAGAAGGTTCTGCAGTACCTGTTGGTGT‑CCTGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAA < 2:295269/144‑1 CGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCGCGAAAACCTTGGTTTTTGAGAAGGCTCTGCCTTACCTGTTGGTGT‑CCCGTTTACGTGACATTCAGCCACTCCCCAAACAGGCTGGCTGCAATGCAA > 2:28738/1‑149 GCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGAAAT > 1:804354/1‑149 TGGCGATATCAAATTGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCAGTACCTGTTGGTGT‑CCCGGTTCTGTGGCTTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTT < 1:557397/149‑1 GATATCAAATCGGATGGCACTGTGCAAACGGCTCCCGAAAACCTTGGTGTGGGAGAAGGATCTGCATTACCTGTTGGTGT‑CCCGGTTCCCTTGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATACAATTGTGCCCCTTTGTCCGC > 2:403025/1‑149 GATGTCACTGTGCAAACGGCTCGCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCC < 2:458618/149‑1 GATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCGGCTTTTTCTGCTGAGGAATACCC > 1:189984/1‑149 TGGCACTGTGCAAACCGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGCCCTTCAGCCACTCCGCCAACATGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGG < 2:865155/149‑1 cggtcCAAACGGCTGTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTG < 2:306043/144‑1 CTGTGCAAGCGGCTCTGGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTG < 2:776174/149‑1 TGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAGTAACCGGAACTGGCA > 1:591594/1‑149 tacatgtCTCTCGCAAACCTGGGTGTGGGAGAAGGTTCCGTATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATTCAATGTTGCCGCTTTTTCTTCTGAAGAATACCCGGAACTGGCAAA < 2:572329/142‑1 AACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGTCAAAGG > 2:601334/1‑149 AACGGCTCTCGAAAACCTTGGATTGGGAGAAGGCTCTGGAGTACCTGTTTGTGC‑CCCGCTTCCGTGGCCTTCAGCCACTCCGCCAACCGGCTGGCTGAAATGCAATGGTGGCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGG < 2:911726/149‑1 ACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAAGAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGC < 1:264003/149‑1 ACGGCTCTCGAAAACCTTGGCTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTTGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCCGAAGAATACCCGGAACGGGCAAAGGC > 2:522931/1‑149 GCTCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGTCCCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTCTCTCCTGAAGACTACCCGGAACTGGCAAAGGCTT > 2:833868/1‑149 TCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAA < 2:846145/121‑1 TCTCGAAAACCTTGGTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAA > 1:846145/1‑121 GTTTGGGAGAAGGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTG > 1:623424/1‑149 gtgGGGAGAAGGCGCTGCATTACCTGTTGGTGT‑CCCGGTTGCGTGGCCTTCACCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTTCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGC < 2:332697/146‑1 GGCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGATTTACG > 1:691746/1‑149 GCAGCGTGGTGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/1207643‑1207805‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttggtttgggagaaggCTCTGCATTACCTGTTGGTGT‑CCCGGTTCCGTGGCCTTCAGCCACTCCGCCAACAGGCTGGCTGAAATGCAATGGTGCCGCTTTTTCTGCTGAAGAATACCCGGAACTGGCAAAGGCTTATCCGACAAATAAATTGCCTGATTTACG < NC_000913_3_pae_tpiA/1209602‑1209456 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |