New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_pae_tpiA = 2430968NA (NA)6 (0.170)
+GTTCACTGTAG		 6/262 4.2 10.4% noncoding (40/84 nt) REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913_3_pae_tpiA = 2662392 56 (1.430)noncoding (84/266 nt) REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ATGCGGCGTAAACGCCTTATCCGACCTACGGTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/2430934‑2430968
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGTACAGAACCCCAGGGCGGATATGGCGTTCACGCCGCATCCGACAACAGGTACAAACGCCACGATAAAAAAATGGCACTGAAGGTTAAATACCCGACTAAATC  <  NC_000913_3_pae_tpiA/2662392‑2662250
                                   |||||||||||                                                                                                                                               
ATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCGTAATGCGTCTTA                                                                                                                      >  1:120977/1‑73
ATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCGTAATGCGTCTTA                                                                                                                      <  2:120977/73‑1
  GCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATGCGACGCGTAATGCGTCTTATCAGGC                                                                                                                <  1:442335/77‑1
  GCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATGCGACGCGTAATGCGTCTTATCAGGC                                                                                                                >  2:442335/1‑77
                TTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATGCGACGCGTAAT                                                                                                                              <  1:416477/49‑1
                TTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATGCGACGCGTAAT                                                                                                                              >  2:416477/1‑49
                                        gccctGGCCTTATGCGCCGCGTAATGCGTCTTACCAGGCCTACAGAGTACAGAACCCCAGGGCGGATATGGCGTTCACGCCGCATCCGACAACAGGTACAAACGCCACGATAAAAAAATGGCACTGAAGGTTAAATACCCGACTAAATC  <  1:368406/144‑1
                                   |||||||||||                                                                                                                                               
ATGCGGCGTAAACGCCTTATCCGACCTACGGTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_pae_tpiA/2430934‑2430968
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGTACAGAACCCCAGGGCGGATATGGCGTTCACGCCGCATCCGACAACAGGTACAAACGCCACGATAAAAAAATGGCACTGAAGGTTAAATACCCGACTAAATC  <  NC_000913_3_pae_tpiA/2662392‑2662250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.