New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	485590 =	21 (1.610)	3 (0.240)	3/238	1.4	13.1%	coding (30/1194 nt)	acrA	multidrug efflux system
	?	NC_000913_3_pae_tpiA	485609 =	20 (1.610)					coding (11/1194 nt)	acrA	multidrug efflux system
Rejected: Frequency below/above cutoff threshold.

AGTTTTGACTGTTACTACGCCAACGGCGGGCATCTGCTGGCCACCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATACATTCACAAATGTATGTAAA  >  NC_000913_3_pae_tpiA/485479‑485734                                                                                                                                   |                                                                                                                              aGTTTTGACTGTTACTACGCCAACGGCGGGCATCTGCTGGCCACCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGCACGACCGCCACAGGCGTAAACCCTCTGtttttc                                                                                                                          >  2:31407/1‑135 (MQ=255) aGTTTTGACTGTTACTACGCCAACGGCGGGCATCTGCTGGCCACCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTg                                                                                                                          >  1:238118/1‑136 (MQ=255)  gTTTTGACTGTTACTACGCCATCGGCTGGCATCTGCGGGCCACCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGACCGACCGCCAGAGGCGTAAACCCTCCGttttctt                                                                                                                         >  2:122137/1‑133 (MQ=255)           gTTACTACGCCAACGGCGGGCATCTGCTGGCCACCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAAAGCATCAGAACGACCGCCAGAGGCGTAAACCATCTGTTTTTGTTCattggta                                                                                                                >  2:72112/1‑131 (MQ=255)              actacGCCAACGGCGGGCATCTGCTGGCCACCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAAc                                                                                                             <  2:128769/136‑1 (MQ=255)               tagtaagacgataatattaacgcagcaatgggtttattaacttttgaccattgaccaatttgaaatcggacactcgaggtttacatatgaacaaaaaCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAAcc                                                                                                            >  2:247290‑M1/98‑136 (MQ=255)                 acGCCAACGACGGGCATCTACTGGCCACCTTGGTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTc                                                                                                          >  2:59425/1‑136 (MQ=255)                                aTCTGCGTGCCACCTTGTTGGCCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCa                                                                                           <  2:76922/136‑1 (MQ=255)                                 tCTGCTGGCCACCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCaa                                                                                          >  1:14048/1‑136 (MQ=255)                                   tgctgGCCACCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTcc                                                                                                  >  1:23848/1‑126 (MQ=255)                                   tgctgGCCACCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTcc                                                                                                  <  2:23848/126‑1 (MQ=255)                                              ttgttgGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATtggtcaatggt                                                                             <  2:219833/136‑1 (MQ=255)                                               tgttgGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATtggtcaatggtc                                                                            >  1:122783/1‑136 (MQ=255)                                                              tcgtcACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAAcc                                                             >  2:112581/1‑136 (MQ=255)                                                                  cacaTCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAAACCAtt                                                         >  1:254902/1‑136 (MQ=255)                                                                                            ggtttacatatgaacaaaaacagagggtttacgcctctgTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTAATATTATCGTCTTACTa                               >  2:247290‑M2/40‑136 (MQ=255)                                                                                               agCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTAtattat                                         <  2:88186/123‑1 (MQ=255)                                                                                               agCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTAtattat                                         >  1:88186/1‑123 (MQ=255)                                                                                                      gAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGtacatac                     <  2:14048/136‑1 (MQ=255)                                                                                                        aCGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTaaa                                                                                                              <  2:263157/45‑1 (MQ=255)                                                                                                        aCGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTaaa                                                                                                              >  1:263157/1‑45 (MQ=255)                                                                                                                cagagggtttacgcctctgTTTTTGTTCATATGTaaa                                                                                                              <  2:153215‑M2/18‑1 (MQ=255)                                                                                                                cagagggtttacgcctctgTTTTTGTTCATATGTaaa                                                                                                              >  1:153215‑M2/20‑37 (MQ=255)                                                                                                                     GCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATACATTCACAAatgtatg      <  2:28184‑M1/136‑1 (MQ=255)                                                                                                                         aaaCCCTCTGTTTTTGTTCATATGTAAACCTCGGGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATACATTCACAAATGTATGTaaa  <  2:122783/136‑1 (MQ=255)                                                                                                                                   |                                                                                                                              AGTTTTGACTGTTACTACGCCAACGGCGGGCATCTGCTGGCCACCTTGTTGGGCCTGTTTGTCGTCACATCCTGTTAGGGCTAAGCTGCCTGAGAGCATCAGAACGACCGCCAGAGGCGTAAACCCTCTGTTTTTGTTCATATGTAAACCTCGAGTGTCCGATTTCAAATTGGTCAATGGTCAAAAGTTAATAAACCCATTGCTGCGTTTATATTATCGTCGTGCTATGGTACATACATTCACAAATGTATGTAAA  >  NC_000913_3_pae_tpiA/485479‑485734

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.