New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3881116 =	32 (1.130)	8 (0.290)	6/272	2.7	22.6%	coding (106/1074 nt)	recF	gap repair protein
	?	NC_000913_3_pae_tpiA	3881133 =	24 (0.880)					coding (89/1074 nt)	recF	gap repair protein

CTTTCTGGTAGGTGCCAACGGCAGTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/3881144‑3881116 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcaCCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAACATAAGCCGCGCTCTGGCTGGCCGCATCTTCAATCTG  >  NC_000913_3_pae_tpiA/3881133‑3881280                                                                                                                                                                                   CTTTCTGGTAGGTGCCAACGGCAGTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAAT                                                                                                    >  1:379545/1‑79 CTTTCTGGTAGGTGCCAACCGCAGTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAAT                                                                                                    <  2:379545/79‑1        GTAGTTGCCCACTGCAGTGGCGTCTACTAGAAAGTTAAAGCCGTTGCATAAGGCGAGATCCGCGGATTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAACATAAGCCGTGCTCTG                       >  2:309168/1‑149        GTAGGTGCCAACGGCAGTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAACATAAGC                                >  1:1294/1‑140        GTAGGTGCCAACGGCAGTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAACATAAGC                                <  2:1294/140‑1        GTAGGTGCCAACGGCAGTGGCA‑AAACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAA                                       <  1:61141/132‑1        GTAGGTGCCAACGGCAGTGGCA‑AAACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAA                                       >  2:61141/1‑132            GTGCCAACGGCAGTGGCACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGAGGTATTGATGTTGAGCACACCTTGTAGCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCTGGACAACATAAGCCGCGCTCTGGCTG                   >  1:491131/1‑149                             ACCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAACATAAGCCGCGCCCTGGCTTGCCGCATCTTCAttttg  >  2:27465/1‑144                                                                                                                                                                                   CTTTCTGGTAGGTGCCAACGGCAGTGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913_3_pae_tpiA/3881144‑3881116 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcaCCTACCAGAAAGTTAAAGCCGGGAGATAAGGCGAGATCCGCGGTTTCAATGTTGCGGAAATCGCGGATCAACAAGCGGGTGAGGGACATTACAGTCTCATTGGCATGACAACATAAGCCGCGCTCTGGCTGGCCGCATCTTCAATCTG  >  NC_000913_3_pae_tpiA/3881133‑3881280

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.