New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_tpiA	3082756 =	30 (1.060)	4 (0.150)	4/268	3.4	12.6%	noncoding (67/147 nt)	REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913_3_pae_tpiA	3082788 =	27 (1.010)					noncoding (99/147 nt)	REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACTCGCCCTTTTTCGCCGCCT  >  NC_000913_3_pae_tpiA/3082608‑3082899                                                                                                                                                     |                                                                                                                                                 tCCTGCATCGGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTg                                                                                                                                                  <  2:70331/149‑1 (MQ=255)   cTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGcc                                                                                                                                                >  1:24029/1‑149 (MQ=255)         ccgccgAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGgatgc                                                                                                                                          <  2:391616/149‑1 (MQ=255)           gccgCACGCGCCCAGATTATTCGCGATCGCATGACCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGgatgcga                                                                                                                                        <  1:91182/149‑1 (MQ=255)                aCGCTCCAAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCCCGCCGCATCTGACATGAATGGCACATTTGTTACCTAGTGCGCATTGCCGGATGCGATGCTg                                                                                                                                   <  2:286155/149‑1 (MQ=255)                             atTCGCTATCGCATGAGCGCGGATGGGATTAAGTAAAGGCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATcc                                                                                                                      <  1:134824/149‑1 (MQ=255)                             atTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATcc                                                                                                                      <  1:134811/149‑1 (MQ=255)                                      ggCATGGGCGCGGATGGGATTAAGGAAAGGCTGGTGGGGTGGAACGTAGGTCGGATAAGGCGTTCCCGCCGCCTCTGCCCTTTATGGGACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACgg                                                                                                             <  2:332228/148‑1 (MQ=37)                                      cGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACgg                                                                                                             <  2:350322/149‑1 (MQ=255)                                       gCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGAGGCGCTGCTGCCGCATCTTATCCGGCCTACggg                                                                                                            >  1:282647/1‑149 (MQ=255)                                          tGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGc                                                                                                         <  2:24029/149‑1 (MQ=255)                                                    tGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAgg                                                                                              <  1:387265/149‑1 (MQ=255)                                                                 aaccTGGTGGCGCCGGAGGGAGGTGAGAAAAGGCGTTCCCGCCGCATCTGACAGGAAGGGCACAGTTGTTACCTTGTTCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGt                                                                                 <  2:308360/147‑1 (MQ=37)                                                                               gAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCg                                                                   >  1:306603/1‑149 (MQ=255)                                                                                       gTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCTGTCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAAt                                                           <  2:161221/149‑1 (MQ=255)                                                                                       gTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAAt                                                           <  1:213561/149‑1 (MQ=255)                                                                                             tAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCAc                                                                             >  2:6805/1‑125 (MQ=255)                                                                                             tAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCAc                                                                             <  1:6805/125‑1 (MQ=255)                                                                                                ggCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGttt                                                  >  1:169356/1‑149 (MQ=255)                                                                                                  cGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGACGCCACG‑AGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTa                                                <  1:471448/149‑1 (MQ=39)                                                                                                   gTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTAc                                               <  1:371116/149‑1 (MQ=255)                                                                                                       aCGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AGCGTAGTTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGt                                           <  1:351023/149‑1 (MQ=255)                                                                                                                  gACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGTATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGcgcatcgcat                                >  2:105976/1‑149 (MQ=255)                                                                                                                     aTGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCt                              >  1:461596/1‑148 (MQ=255)                                                                                                                     aTGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCt                              <  2:461596/148‑1 (MQ=255)                                                                                                                          tGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGAATACCACATTCATGGGACGTTTTACCCGTGCGCATCGCATCTGGTGCt                        >  1:265983/1‑149 (MQ=39)                                                                                                                              acaTTTGTTACCTGGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACt                    <  2:291183/149‑1 (MQ=255)                                                                                                                                aTTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACTCg                  >  1:41507/1‑149 (MQ=255)                                                                                                                                         cTTGTGGGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACTCGCCCTTTTTc         <  1:203636/149‑1 (MQ=255)                                                                                                                                                gcATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCATACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCTTCTGGTGCTTATTCGCCCTTTTTCGCCCCCt  >  1:176863/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                 TCCTGCATCCGCCGAACGCGCCCAGCATATTCGCGATCGCATGAGCGCGGATGGGATTAAGTAAAGCCTGGTGGTGTCGAACGTAGGTCAGATAAGGCGTTCACGCCGCATCTGACATGAATGGCACATTTGTTACCTTGTGCGCATTGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGGTGCCG‑AACGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACATTAATGGCACGTTTTACCCGTGCGCATCGCATCTGGTGCTTACTCGCCCTTTTTCGCCGCCT  >  NC_000913_3_pae_tpiA/3082608‑3082899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.