| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 2549484 = | NA (NA) | 4 (0.150) | 4/268 | 3.4 | NA | noncoding (19/98 nt) | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_pae_tpiA | 3598404 = | NA (NA) | noncoding (8/99 nt) | RIP259 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP259 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
CTGGTGGATGGCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAAT > NC_000913_3_pae_tpiA/3598265‑3598552 | cTGGTGGATGGCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGAGATGAGGATTAAGACACAACAGGGCGGCTGGGGCAAGTGTTAATCGTCAAGTTTGATTCCAAAAGTGAAATTGCCTGATGCGCTACgtc > 2:68075/1‑147 (MQ=255) ggtggATGGCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTCATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGcgtg > 1:110834/1‑146 (MQ=255) ggACGGCGGAGGCAGGCGTGGAAGTTCGGGGTGCGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTGGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCa < 2:146554/149‑1 (MQ=255) gATGGCTGATGCAGCCCGTGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAg < 2:470515/149‑1 (MQ=255) gATGGCGGAGGCAGGCGGGGAAGAGCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCac < 2:216546/149‑2 (MQ=255) cgGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCCAAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTg > 2:211715/1‑149 (MQ=255) gtgtGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCCGGc > 1:103715/1‑122 (MQ=255) gtgtGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGc < 2:103715/122‑1 (MQ=255) atgaCGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCtt > 1:23336/1‑149 (MQ=255) tgaCGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCttt < 1:33617/149‑1 (MQ=255) tgaCGGCGTTTATGCAGGCGCGGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCttt < 1:22407/149‑1 (MQ=255) cAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCttt < 1:28154/135‑1 (MQ=255) cAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCttt > 2:28154/1‑135 (MQ=255) aGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATATTGTAGGCCg > 1:382545/1‑149 (MQ=255) tGGGGTTTACGGCCCAACAGGGCGGCTGGGAGAAGTGTTAATCGTCACGTTTGATTTCAAAAGTGCTATTGCCTGATGCGCTACGCTTCTCAGCCCTCCAATGCGTGTTGCCATTTACTGCCTTCTTTGCATCTTGTAGGCCggctccg > 2:319476/1‑144 (MQ=255) tGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTAt < 1:253285/90‑1 (MQ=255) tGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTAt > 2:253285/1‑90 (MQ=255) ggCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTAcgc > 1:357222/1‑149 (MQ=255) ggCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGGGTTGCAATTTACTGATTTCTTTGGATATAGTAGGTCGGGTAAGGCGTTTAcgc > 2:151198/1‑149 (MQ=39) ggcggcTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTa > 2:279505/1‑69 (MQ=255) ggcggcTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTa < 1:279505/69‑1 (MQ=255) aagaAGGGTTAATCGTAAAGTTTGATTTCCAAAGGGATATTGCATGGTACGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTATTGAGTTCTTTGGATCTTGTAGGCGGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCaa < 2:44256/148‑1 (MQ=25) agaAGTGTTAATCGTCAAGTTTGATTTCAAAAGGGATATTGCCTGATGAGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCacc > 2:31356/1‑147 (MQ=255) agaAGTGTTAAGCGTCGAGTTTGATTTCAAAAGTGGTATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTTATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAAc < 1:308979/149‑1 (MQ=255) tgtTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTCTCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGGTCTTGTAAGCAGGATAAGGCGTGTACGCGACATCCGGCATGATGCAACGTAcg > 2:349473/1‑148 (MQ=38) gtTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCCACGTACTc > 1:263194/1‑149 (MQ=255) ttAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTATGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTCAGCCCCATCCGGCATGACGCAACCTACCCg > 2:152463/1‑149 (MQ=37) tCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAg > 2:347002/1‑149 (MQ=255) gATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGAt > 2:102378/1‑80 (MQ=255) gATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGAt < 1:102378/80‑1 (MQ=255) aTTTCAAAAGTGTTATTGCCTGATGCGCTACGCTTATCAGGCCTACACTGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTggc < 2:181847/149‑1 (MQ=255) aaaaGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGCAGAAAAATAAATGTTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCaa < 1:489126/149‑1 (MQ=38) ttGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGCTCTTGTAGGCCGGATAAAGCGTTTCCGCCGCATCCGGCACGAAGCAACGTACGCGCTATTAGCCATTTGCCGGCACACCAAAgcag > 2:494030/1‑146 (MQ=25) ggCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGc < 1:41418/148‑1 (MQ=255) ccTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCg > 1:325357/1‑149 (MQ=255) tGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGAt > 1:60946/1‑149 (MQ=255) gATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGAtt > 2:245083/1‑149 (MQ=255) gATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGAtt < 1:157149/149‑1 (MQ=255) gcgcTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAAt < 1:245083/149‑1 (MQ=255) | CTGGTGGATGGCGGATGCAGGCGTGGAAGATCGCGGTGTGATGACGGCGTTTATGCAGGCGCTGGGGTTTACGGCACAACAGGGCGGCTGGGAGAAGTGTTAATCGTCAAGTTTGATTTCAAAAGTGATATTGCCTGATGCGCTACGCTTATCAGGCCTACAATGTGTGTTGCAATTTACTGATTTCTTTGGATCTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAAGCAACGTACTCGATATTAGCAATTTGGCGGCAACCCAAAGTTGCCGATTAAT > NC_000913_3_pae_tpiA/3598265‑3598552 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |