| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | = 3944991 | NA (NA) | 5 (0.060) | 5/272 | 6.8 | 7.8% | noncoding (1288/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_pae_tpiA | = 4038798 | 62 (0.750) | noncoding (1280/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TAAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgct‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/3944844‑3944991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACATAGTGTCGCTGCCGCAGCTTCGGTGCATGGTTTAGCCCCGTTAC < NC_000913_3_pae_tpiA/4038798‑4038649 TAAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGGCGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACAAAAGTAACGAGATAGCTGGTGAAAAGC > 2:1309410/1‑149TAAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGTGTGAAAAGC < 1:1296345/149‑1TAAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGC < 2:1133398/149‑1TAAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGC > 1:672820/1‑149TAAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGC > 1:666377/1‑149TAAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGAGGGAAAAGC > 2:353262/1‑149TAAAACATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGC < 1:1256419/149‑1 aacCCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCC < 2:691917/146‑1 AAACCACGCACCGAAGCGGCGGCAGCGACGTTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGGGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCC < 2:72820/149‑1 AACCATGCACCGCAGCCCCGGCGGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAGGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGGAAAGCCa > 2:534617/1‑148 AACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCC > 1:1113934/1‑149 AACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCC < 1:1364948/149‑1 AACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTACCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCC < 1:342412/149‑1 ACCATGCTCCTAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTACCAACAGTACGGGTGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCG < 1:418830/149‑1 ACCATGCCTCGAAGCGGGGGCAGCGACGCTTACGCGTTGGTGGTGTA‑GGTAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGGATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCG < 1:630976/149‑1 ACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGGCCG > 1:1156492/1‑149 ACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCG < 2:1056713/149‑1 ACCAGGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCG < 2:501023/149‑1 CCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGC > 1:304301/1‑149 CCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGC > 2:120463/1‑149 CATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGTGTTGACGTTTCTCCCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCT < 1:334112/149‑1 CATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCT < 2:1095914/149‑1 GCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGATCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGCAGTGCGAATGCTGACATAAGTAACGATAAAACGGGTGAAAAGCCCGCccgc > 2:1369957/1‑145 AGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCG > 1:275310/1‑137 AGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCG < 2:275310/137‑1 TGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCG < 2:1107109/69‑1 TGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCG > 1:1107109/1‑69 CTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCC < 1:34174/59‑1 CTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCC > 2:34174/1‑59 GATAAAGCGGGTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCGCACAGCACACCTTCACAGGCTTCCCAAACGCTCCCCTACCCAACACAACATAACGTCCCTGCCGCACCTTCGGTG > 2:598650/1‑149 TAAAGCGGGTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGC > 1:520626/1‑70 TAAAGCGGGTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGC < 2:520626/70‑1 GTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTC < 2:952483/78‑1 GTGAAAAGCCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTC > 1:952483/1‑78 CCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACATAGTGTCGCTGCCGCAGCTTCGGTGCATGGTTTAGCCCCGTTAC > 2:393153/1‑149 CCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACATAGTGTCGCTGCCGCAGCTTCGGTGCATGGTTTAGCCCCGTTAC > 1:518303/1‑149 CCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCAAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACCCATAGTGTCGCTGCCGCAGCTTCGGTGCATGGTTGAGCCCGGTTAC > 1:1404560/1‑149 TAAACCATGCACCGAAGCTGCGGCAGCGACGCTTATGCGTTGTTGG‑GTAGGGGAGCGTTCTGTAAGCCTGCGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGcccgct‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_tpiA/3944844‑3944991‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCCGCTTTATCGTTACTTATGTCAGCATTCGCACTTCTGATACCTCCAGCATGCCTCACAGCACACCTTCACAGGCTTACAGAACGCTCCCCTACCCAACAACACATAGTGTCGCTGCCGCAGCTTCGGTGCATGGTTTAGCCCCGTTAC < NC_000913_3_pae_tpiA/4038798‑4038649 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |