| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_tpiA | 3297025 = | NA (NA) | 7 (0.140) | 7/270 | 5.9 | 11.1% | noncoding (27/84 nt) | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP240 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_pae_tpiA | 4296321 = | 56 (1.110) | noncoding (571/600 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCGGCGAAAGCCTTATGGCTGACAGGGGCGATGGTGGCAGTGTCTGGTGTGATTGTCGGCGGGCTGGCGCTGTTGTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/3297178‑3297025‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCAC > NC_000913_3_pae_tpiA/4296321‑4296467 CCGGCGAAAGCCTTATGGCTGACAGGGGCGGTGGTTGCAGTGTCTGGTGTGATTGTCGGCGGGCTGGCGCTGTTGTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGC < 2:726222/149‑1CCGGCGAAAGCCTTATGGCTGACAGGGGCGATGGTGGCAGTGTCTGGTGTGATTGTCGGCGGGCTGGCGCTGTTGTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGC > 1:471367/1‑149 CGGCGAAAGCCTTATGGCTGACAGGGGCGATGGTGGCAGTGTCTGGTGTGCTTGTCGGCGGGCTGGCGCTGTTGTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCC > 2:759414/1‑149 CGGCGAAAGCCTTATGGCTGACAGGGGCGATGGTGGCAGGGTCTGGTGTGATTGTCGGCGGGCTGGCGCTGTTGTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTCTCTGACCTACGGTTTGTATCGTTGTAGGCC > 1:659348/1‑149 CGAAAGCCCTATGGCTGACAGGGGCGATGGTGGCAGTGTCTGGGGTGATTGTCGGCGGGCTGGCGCTGTTGTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGA < 1:480424/149‑1 GGGGCGATTGTGGCAGCGGCTGGTGTGATTGTCGGCCGGCTGGCGCTGTTGTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATAAGACGCTTGCCGCGTCTT < 1:592521/149‑1 GATTGTCGGCGGGCTGGCGCTGTTGTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATGCGACGCTTGCCGCGTCTTATCAGG > 1:36584/1‑129 GATTGTCGGCGGGCTGGCGCTGTTGTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATGCGACGCTTGCCGCGTCTTATCAGG < 2:36584/129‑1 GGCGCTGTTGTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGCTTGTATCGTTGTAGGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCC > 1:444287/1‑116 GGCGCTGTTGTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGCTTGTATCGTTGTAGGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCC < 2:444287/116‑1 GCTGTTGTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATGCGACGCTTGCCGCGTCTTATCAG > 2:439605/1‑110 GCTGTTGTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGATGCGACGCTTGCCGCGTCTTATCAG < 1:439605/110‑1 CCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTTAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCT > 1:595731/1‑149 TGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTTTGTATAAAACCTTCTTC > 1:83053/1‑149 TGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAG > 1:777242/1‑93 TGATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAG < 2:777242/93‑1 GATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCA > 1:702272/1‑149 ATGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCAC < 1:384785/149‑1 CCGGCGAAAGCCTTATGGCTGACAGGGGCGATGGTGGCAGTGTCTGGTGTGATTGTCGGCGGGCTGGCGCTGTTGTTCTGATTTGAGGGAAAACATGTCGGATGCGGCGTAAACGCCTTATCTGACCTACGGTTTGTATCGTTGTAGGCCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_pae_tpiA/3297178‑3297025‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgatGCGACGCTTGCCGCGTCTTATCAGGCCTATCTTAACCGTTGGTTAATTTTTCAAACTCTTCACACCCGGTATCAAACCCTTCCATACAGCTCAGGTTCAACCAGTGCAGCGCCTTTTGCTTGTTCTTCTCGATAAAACCTTCTTCAC > NC_000913_3_pae_tpiA/4296321‑4296467 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |