| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_vch_tpiA | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_vch_tpiA | 257908 | 258683 | 776 | 55 [0] | [0] 55 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 257907 | 0 (0.000) | 53 (1.250) | 45/274 | 0.0 | 100% | noncoding (257907/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 258684 = | 0 (0.000) | noncoding (258684/4641682 nt) | repeat_region | repeat region | |||||
CTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT > NC_000913_3_vch_tpiA/257762‑258055 | cTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt < 1:639048‑M1/149‑4 (MQ=255) gtgtTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACGGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCAGAAGAGCAGATTGATCAAAAAATTTACCGCACTACGCCCGGATATTCGTGAAGGTAagtgca > 2:556010‑M1/1‑143 (MQ=255) gaaaaatTAGATAAATATTGACAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAAAATGAAAAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaaga < 2:11333‑M1/148‑11 (MQ=255) ttttGCCAATTTGGTAAAACAGGTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttttt < 1:16972‑M1/149‑26 (MQ=255) cAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaggataatagattctttttcgtttg > 1:240707‑M1/1‑118 (MQ=255) aaTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgt > 1:402081‑M1/1‑117 (MQ=255) aaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtat < 1:767321‑M1/149‑43 (MQ=255) gTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCACACGTGTGCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgt < 1:701007‑M1/149‑47 (MQ=255) caaaaccacaagagataGCAAAGACGAGACCAACACGAAACCCCAAGAGCAGATTGATCAAAAAAATTACCGCACTAGGCCCGGATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac < 1:5711‑M1/142‑51 (MQ=255) cATGACAACAGGATATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGTCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaac < 1:324625‑M1/149‑51 (MQ=255) aTCACAACATGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctctatgcgtccacg > 2:8837‑M1/1‑98 (MQ=255) aTCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaccg > 2:288420‑M1/1‑98 (MQ=255) acaacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtga > 1:400660‑M1/1‑95 (MQ=255) aacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaa > 2:238644‑M1/1‑93 (MQ=255) aacaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaa > 1:249466‑M1/1‑93 (MQ=255) caGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaaggtgaaacc > 1:202046‑M1/1‑91 (MQ=255) aGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccg > 1:315679‑M1/1‑90 (MQ=255) aGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgt > 1:365268‑M1/1‑83 (MQ=255) aGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgt < 2:365268‑M1/135‑53 (MQ=255) aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcg < 2:249466‑M1/149‑74 (MQ=255) cGTTAACGAGTGGACACTTGATAATCAGATTCATCAAAAAATTTACTGCTCTAGTCCCGTATATTCGTGAAGCTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt < 2:648953‑M1/149‑75 (MQ=255) cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgcaaccggcaccggaagtgcgggaattc > 2:489303‑M1/1‑69 (MQ=255) gAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaa < 2:436178‑M1/76‑9 (MQ=255) gAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaa > 1:436178‑M1/1‑68 (MQ=255) gAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTAGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtaaaaccagcaccggaagttcgtgaattct > 2:133243‑M1/1‑68 (MQ=255) ggggacACCCGAAGAGCGCATTGATCAAAAAATTTCCCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgatgctttttcgattgtcttgctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgg < 1:437778‑M1/147‑84 (MQ=255) acCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctgg > 1:136338‑M1/1‑60 (MQ=255) ctcgaAGAGCAGATTGATCAAAATATGTACCGCATTAGGCCCGTATTTTCGTGAAGGTAagtgcaaagataatcgattccttgtcgattggctggctgtatgcgtcaacgtgaaaccggcaccggaagtgctggaattctggggctggt < 2:378043‑M1/147‑91 (MQ=255) gagagcCGGTTGATCAAAAAATTCTCCGCACTAGGCCCGTATTTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggat < 1:581181‑M1/148‑95 (MQ=255) aaGAGCAGATTGACTAAAAAATTTAGCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagctaatcgattctttttctgttgtctggttgtatgcgtcgacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggat < 1:708791‑M1/149‑95 (MQ=255) ccgatctaaaaaatttaacgCACGAGGGCCGTATATTCGTGAAGGTAagtggaaagatattcgattgtttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgg < 2:377139‑M1/142‑103 (MQ=255) cAAAAAAATTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagagaatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgc < 1:692934‑M1/149‑109 (MQ=255) aaaaaaTTTACCGCACTAGGCCCGTATATTTGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca < 2:380275‑M1/149‑110 (MQ=255) aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgcttgtctggctgtctgcgtcaacgtgaaaccggcaccggaagtccgggaattctggggcgggtggatagcgctcggagcgca > 2:300755‑M1/1‑40 (MQ=255) aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaaatgcgtgaattctggggcgggaggagagagcgggaagatcgg > 1:377139‑M1/1‑39 (MQ=255) aaaaaTGTAACGCACTAGGCCCGTATATTCGAGAAGGAAagtacaaagataatcgattctttttcgattgtctggcggtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcag < 2:240707‑M1/149‑111 (MQ=255) ccGCACTAGGCCCTGATATTCGTGAAGGTAagtgcaaacataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgt < 2:56063‑M1/149‑120 (MQ=255) cGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaatccggtgccttgattgaacaagttgtggggctggtggatggagctggaatcgcaggaatcccgtt < 1:382864‑M1/149‑121 (MQ=255) cGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtt < 1:246099‑M1/149‑121 (MQ=255) gCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcactggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttt > 1:743174‑M1/1‑28 (MQ=255) gCACTAGGCCCGTATATTCGTCAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgaaagaatccctttt < 2:402081‑M1/149‑122 (MQ=255) cACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt > 2:107095‑M1/1‑27 (MQ=255) cACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt < 1:107095‑M1/101‑75 (MQ=255) cccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaaccccgttttacctaca < 2:641220‑M1/149‑130 (MQ=255) ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctg > 1:622254‑M1/1‑19 (MQ=255) ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctg < 2:622254‑M1/101‑83 (MQ=255) tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta > 1:578257‑M1/1‑16 (MQ=255) tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta < 1:301390‑M1/149‑134 (MQ=255) tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta > 2:533613‑M1/1‑16 (MQ=255) tatTCGTGAAGGTAagtgcaaagataatcgattcttttttttttttttttctgtatgcgtcaacgtgaaaccgtcaccggaagtgcgtggattctggggctggtggttggcgctggaagtgccggaatgccgttttacctacagttatc > 2:260140‑M1/1‑14 (MQ=255) atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacca < 1:238644‑M1/149‑137 (MQ=255) tCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagt > 1:512738‑M1/1‑11 (MQ=255) cGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtt < 2:400660‑M1/149‑140 (MQ=255) gTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctg > 1:368868‑M1/1‑3 (MQ=255) aagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtctgtt < 2:572143‑M1/149‑149 (MQ=255) | CTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATT > NC_000913_3_vch_tpiA/257762‑258055 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |