New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	1061349 =	35 (0.780)	4 (0.090)	4/272	6.2	10.3%	noncoding (1061349/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	1061384 =	37 (0.880)					noncoding (1061384/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTAAAGAGCCAGTATTCATTAACCCGCAGGATGCCAGCGCGCGCGGTATTCGTAACGGTGATGTGGTACGCGTCTTTAACGC  >  NC_000913_3_vch_tpiA/1061201‑1061492                                                                                                                                                     |                                                                                                                                                gCCTGATTGAGATCTACTCGAAAACTGTCTCCGATATGAACTACGACGATTGTCAGGGGCATCCGAGGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCTCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGAt                                                                                                                                                 >  2:170764/1‑149 (MQ=255)    tGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTc                                                                                                                                              >  1:636143/1‑149 (MQ=255)      aTTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCg                                                                                                                                            >  1:430765/1‑149 (MQ=255)                     aaaaCTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCACTCTGTCCACCCGGATTTCAGACTTCACCCGCCGtt                                                                                                                             >  2:104699/1‑149 (MQ=255)                       aaCTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTAt                                                                                                                           <  1:329682/149‑1 (MQ=255)                       aaCTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCACCCGGATTTCCGACTTCACTCGCAGTTAt                                                                                                                           <  1:329586/149‑1 (MQ=255)                                        aCTACGACGGTTGTCAGTGGCATCCGATGTAGTTTGAGAAAATCGAACGCTTCCACGGTGGGCCTGGCTCGCAAAAGTATCTGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTg                                                                                                          <  2:223138/149‑1 (MQ=255)                                             gacgaTTGTCAGGGGCATCCGATGTGGTTTGAGAACATCGAGCGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCa                                                                                                     >  1:775111/1‑149 (MQ=255)                                             gacgaTTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGGGTCa                                                                                                     >  1:525542/1‑149 (MQ=255)                                             gacgaTTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCa                                                                                                     >  2:136191/1‑149 (MQ=255)                                             gacgaTTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCa                                                                                                     >  2:42599/1‑149 (MQ=255)                                             gacgaTTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCa                                                                                                     <  2:474219/149‑1 (MQ=255)                                              acgaTTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATGCGTTGCATCTACAATCTGTGCATCCGGATTTCCGACTTCAATCTCAGTTATATGAGTCGGAAACGCTGCGTCAg                                                                                                    >  2:256209/1‑149 (MQ=255)                                               cgaTTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGc                                                                                                   <  1:42599/149‑1 (MQ=255)                                                       aGGGGCATCCGATGTGGTTTGAGAAAATCGATCGCTCACCCTCGGGGCCTGGCGCGCAAAAGTATCCGTTGCATCTGCAAACTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACg                                                                                           <  1:412943/149‑1 (MQ=255)                                                                 gATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTa                                                                                 >  1:244560/1‑149 (MQ=255)                                                                  aTGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTaa                                                                                <  1:397625/149‑1 (MQ=255)                                                                             gaAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTAAAGAGCCAGTAt                                                                     >  2:451911/1‑149 (MQ=255)                                                                              aaaaTCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTAAAGAGCCAGTAtt                                                                    >  1:213379/1‑149 (MQ=255)                                                                                     aaCGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAAc                                                                                                              <  2:136954/100‑1 (MQ=255)                                                                                     aaCGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAAc                                                                                                              >  1:136954/1‑100 (MQ=255)                                                                                     aaCGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGAATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTAAAGACCCAGTATTCCTTAAc                                                             >  2:390388/1‑149 (MQ=255)                                                                                         cTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTAAAGAGCCAGTATTCATTAACCCGc                                                         >  1:687938/1‑149 (MQ=255)                                                                                          tCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGAATTACAGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGCCAGCAATATCCGGTAGCGGGTAAAGAGCCAGCATTCACTAACCcaca                                                        >  2:481012/1‑149 (MQ=255)                                                                                                  tGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTAAAGAGCCAGTATTCATTAACCCGCAGGATGCCa                                                <  2:430765/149‑1 (MQ=255)                                                                                                        tGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTTTGCATCCGGATTTCCGACTTCATTCGCAGTTATGCGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTAAAGAGCCAGTATTCATTAACCCGCACGATGCCAgcgcgc                                          <  1:742874/149‑1 (MQ=255)                                                                                                                        tcGTTGCATCTGCAATCTGTGCATCCGGGTTTCCGACTTCAATCGCAGGTATGGGAGTCGGAAACGCGGCGTCAGCAATATACGGTAGCGGGTAAAGCGACAGTATTCATTAACCCGCCGGATGCCAGCGCGCGAGGTATTCTTAACgg                          <  2:409092/148‑1 (MQ=255)                                                                                                                                tCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAGTATACGGTAGCGGGTGAAGAGCCCGTATTCATTAACCCGCACGAAGCCAGCGCGCGCGGTATTCGTAACGGTGATGTgg                  >  1:698185/1‑149 (MQ=255)                                                                                                                                  tGCAATCTGTGCATCCGGATTTCCGACTGCAGTCGCAGTTATGTGAGGCGGAAACGCTGCGGCAGCAATGTACGGTAGCGGGTAAAGAGCCAGTATTCATTAACCCGCAGCATGCCAACAGACAGGGTGTTCGTAACGGTGAAGTggga                >  1:299371/1‑147 (MQ=255)                                                                                                                                            gCATCCCGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTAAAGAGCCAGTATTCATTAACCCGCAGGATGCCAGCGCGCGCGGTATTCGTAACGGTGATGTGGTACGCGTCTTTa      <  1:31134/149‑1 (MQ=255)                                                                                                                                             cATCCGGATTTCCGCCTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTAAAGAGCCAGTATTCATTAACCCGCAGGATGCCAGCGCGCGCGGTATTCGTAACGGTGATGTGGTACGCGTCTTTaa     <  1:232880/149‑1 (MQ=255)                                                                                                                                              aTCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTAAAGAGCCAGTATTCATTAACCCGCAGGATGCCAGCGCGCGCGGTAtt                                  <  2:154332/119‑1 (MQ=255)                                                                                                                                              aTCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTAAAGAGCCAGTATTCATTAACCCGCAGGATGCCAGCGCGCGCGGTAtt                                  >  1:154332/1‑119 (MQ=255)                                                                                                                                              aTCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTAAAGAGCCAGTATTCATTAACCCGCAGGATGCCAGCGCGCGCGGTATTCGTAACGGTGATGTGGTACGCGTCTTTAAc    >  1:551583/1‑149 (MQ=255)                                                                                                                                                ccGGATTTCCGACTTCACTCGCGGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTAACGAGCCAGTATTCATTAACGCGCAGGATGCCAGCGCGCGCGGTATTCGTAACGGTGATGTGGTACGCGTCTTTAACga  >  1:330182/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                GCCTGATTGAGATCTACTCGAAAACTATCGCCGATATGAACTACGACGATTGTCAGGGGCATCCGATGTGGTTTGAGAAAATCGAACGCTCCCACGGTGGGCCTGGCTCGCAAAAGTATCCGTTGCATCTGCAATCTGTGCATCCGGATTTCCGACTTCACTCGCAGTTATGTGAGTCGGAAACGCTGCGTCAGCAATATACGGTAGCGGGTAAAGAGCCAGTATTCATTAACCCGCAGGATGCCAGCGCGCGCGGTATTCGTAACGGTGATGTGGTACGCGTCTTTAACGC  >  NC_000913_3_vch_tpiA/1061201‑1061492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.