New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	3915733 =	36 (0.800)	4 (0.090)	4/284	6.4	9.7%	noncoding (3915733/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	3915808 =	39 (0.880)					noncoding (3915808/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCA  >  NC_000913_3_vch_tpiA/3915591‑3915875                                                                                                                                               |                                                                                                                                               gcgcGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACg                                                                                                                                          <  1:122609/149‑1 (MQ=255)               gCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAgg                                                                                                                            >  1:223289/1‑149 (MQ=255)               gCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCACAACGGTCACGTTGCCAgg                                                                                                                            >  2:482299/1‑149 (MQ=255)                     tCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCAc                                                                                                                      <  1:466652/149‑1 (MQ=255)                       cGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACtt                                                                                                                    >  1:79449/1‑149 (MQ=255)                          acaccccTGAGCGTAACCTACCTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTGGACTACCTTGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCaa                                                                                                                 <  1:151888/144‑1 (MQ=255)                              gCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAAt                                                                                                             <  1:328763/149‑1 (MQ=255)                               ccTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAAt                                                                                                             <  1:186011/148‑1 (MQ=255)                               ccTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAAt                                                                                                             >  2:186011/1‑148 (MQ=255)                                                 cGCCGTGAGAGCTGCCAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAgatagata                                                                                          <  1:130441/149‑1 (MQ=255)                                                        agagCTGCTAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGTCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCtt                                                                                   <  1:657082/149‑1 (MQ=255)                                                           gctgctAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGACCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGt                                                                                <  1:261560/149‑1 (MQ=255)                                                                 aaTGGGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGt                                                                          <  1:279792/149‑1 (MQ=255)                                                                        tctTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGttt                                                                   <  2:223289/149‑1 (MQ=255)                                                                          ttCAGCCTTACGTTTCGCTTCCAATGCTCGCGCTTCGTCGCGATCCTGGCCGCGAATTGCGGTGTCGCCCAAACCGGCAACGTTCCCAGACTGCACTTTACGAATGCCGGAGGACAGATAGACAAACACTCAGTGACCCTGCTGTTACa                                                                 >  2:529768/1‑149 (MQ=255)                                                                           ttaGCCGTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATGGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCAc                                                                <  2:783664/147‑1 (MQ=255)                                                                                      tttCGCTTCCATGGCTCGCGCTTCGACGACATTAATGCTGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCa                                                     >  1:776770/1‑149 (MQ=255)                                                                                          gCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATAcc                                                 <  1:508372/149‑1 (MQ=255)                                                                                          gCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATAcc                                                 >  1:197394/1‑149 (MQ=255)                                                                                            ttCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGATAGGCCACCTTGCCCCGCTGTACTTTAAAAATGTCGCCCCTCAGTTAGTTGAACTCTTCGTAATCTAGCTGTTTCACGATGCGAATCATACCac                                               >  2:657775/1‑148 (MQ=255)                                                                                            ttCCACGCCCCGCGCTTCTGCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGCCAGATAGATAAACTCTTCATGCCCGTGCCGTTTCCCGATCCGCAACCTAcccg                                               >  2:291742/1‑147 (MQ=255)                                                                                                aTGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATGGATAAACTCTTCGCGACCGTCCTGCTCCACCATGCGAATCATACCAGGCtt                                           >  1:289253/1‑149 (MQ=255)                                                                                                  ggCTCGCGCTTCGTCGAGATCCCGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTaa                                         <  2:210725/149‑1 (MQ=255)                                                                                                     tCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATgg                                      <  1:637957/149‑1 (MQ=255)                                                                                                       gcgcTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGACTGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCCCGATGCGAATCATACCAGGCTTAATGGCg                                    >  2:24807/1‑149 (MQ=255)                                                                                                           ttCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGa                                >  1:619373/1‑149 (MQ=255)                                                                                                           ttCGGCGAGATCCTGGCCGCGAATTGAGGTGTCGGCAACAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGa                                <  2:435584/149‑1 (MQ=255)                                                                                                              gtcgAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGagca                             <  1:520204/149‑1 (MQ=255)                                                                                                                 gagaTCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGGTGCATTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGGTGTTTCCCGATGCGAAACATACCAGGCTTAATGGCGGTGAGCAGCg                          >  2:3619/1‑149 (MQ=255)                                                                                                                        tGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGAGGTGCGTg                   >  1:285433/1‑149 (MQ=255)                                                                                                                          gCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGc                 >  2:555731/1‑149 (MQ=255)                                                                                                                            cgcgAAGTGCGGGGTCGGCCAGAACGGTCACGGTGCCAGGCTGCACATCAAGGATGCCGCCAGACATATAGATAATCTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCa               <  1:105373/149‑1 (MQ=255)                                                                                                                                 atcgCGGGGTCGGCCAGAACTGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGGGACCGTGCTGTCTCACGATGCGAATCATACCACGCTTAATGGCCGTGAGCAGCGGTGCGTGGCCAGGGTa          <  2:139177/146‑1 (MQ=255)                                                                                                                                         gtCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCa  <  1:347930/149‑1 (MQ=255)                                                                                                                                              ccAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCgg                                   <  2:355740/111‑1 (MQ=255)                                                                                                                                              ccAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCgg                                   >  1:355740/1‑111 (MQ=255)                                                                                                                                               |                                                                                                                                               GCGCGATCGCTTTGGCCAGTTCCGCAGACGCCTGAGCGTAATCTACGTCGCCGTGAGAGCTGCTAATGTGCTCTTCAGCCTTACGTTTCGCTTCCATGGCTCGCGCTTCGTCGAGATCCTGGCCGCGAATTGCGGTGTCGGCCAGAACGGTCACGTTGCCAGGCTGCACTTCAAGAATGCCGCCAGACAGATAGATAAACTCTTCGTGACCGTGCTGTTTCACGATGCGAATCATACCAGGCTTAATGGCGGTGAGCAGCGGTGCGTGGCCAGGGTAGATCCCCA  >  NC_000913_3_vch_tpiA/3915591‑3915875

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.