New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 3632763	37 (0.820)	5 (0.120)	5/266	5.6	12.5%	noncoding (3632763/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 3632776	36 (0.870)					noncoding (3632776/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAACATTTTATCTTATGACATACACCTCATGTTCGATGGGAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTG‑‑AAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAG  >  NC_000913_3_vch_tpiA/3632629‑3632923                                                                                                                                                    |                                                                                                                                                      tAACATTTTATCTTATGACATACCCCTCATGTTCGATGGGAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAACGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATg                                                                                                                                                      >  2:385063/1‑149 (MQ=255)        ttATCTTATGACATACACCTCATGTTCGATGGGAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTAc                                                                                                                                               >  1:48246/1‑149 (MQ=255)            cTTATGACATACGCCTCATGTTCGATGGGAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGGATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATc                                                                                                                                           <  2:129260/149‑1 (MQ=255)              tATGACATACACCTCATGTTCGATGGGAAAATAATTATATTTTGCAAAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTCGATTCGTCATCAGAACATGCCTCTACAATCGa                                                                                                                                         <  1:777395/149‑1 (MQ=255)                        acCTCATGTTCGATGGAAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAAc                                                                                                                               <  2:189545/149‑1 (MQ=255)                             agcttCGTTGGGAAAATAATTATATTTTGCACAAATCATTCACCCTCCAAGCATAATATGAAATTTCTTATCTCCTCGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATg                                                                                                                          <  1:162773/146‑1 (MQ=255)                                  cggtGGGAAAATAATTATATTTTGCACAAATCATTCATCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAAGCGATTAAGAAAACATTTGacgga                                                                                                                     <  2:97302/146‑5 (MQ=255)                                     tGGGAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTg                                                                                                                  <  2:655542/149‑1 (MQ=255)                                        gAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATAAAATACTGGCa                                                                                                               >  2:3473/1‑149 (MQ=255)                                                 tataTTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTAAAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTaaaa                                                                                                      >  1:734029/1‑149 (MQ=255)                                                      attGCACAAATCCTGCAGCCTCAAAGCATAATATGATGTTTCTTTTCTCGTAGCAGAGAGAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTATACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACa                                                                                                 >  2:582760/2‑149 (MQ=255)                                                       ttGCACAAAACATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACAt                                                                                                <  2:697292/149‑1 (MQ=255)                                                            caAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATaccac                                                                                           >  2:127758/1‑149 (MQ=255)                                                             aaaTCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATaccacc                                                                                          >  1:160561/1‑149 (MQ=255)                                                             aaaTCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATaccacc                                                                                          >  2:301481/1‑149 (MQ=255)                                                                       gCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATgg                                                                                <  1:742002/149‑1 (MQ=255)                                                                           aaaaGCATAATATGAAATTTCTAATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAACAAAATCTATGAAATACTGGGAGGATTAAAAAGACATACCACCGTATTCATGGAGtt                                                                            <  2:63006/148‑1 (MQ=255)                                                                            aaaGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGttt                                                                           >  2:384319/1‑149 (MQ=255)                                                                                  taataTGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGt                                                                     >  1:241332/1‑149 (MQ=255)                                                                                      atGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGtt                                                                 <  1:127758/149‑1 (MQ=255)                                                                                           aTTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTG‑‑aaaa                                                          <  1:315732/149‑1 (MQ=255)                                                                                             ttattATCTCATAGCAGAGAAAGTCGCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTG‑‑AAaaca                                                        <  2:695994/146‑1 (MQ=255)                                                                                              tCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAg                                                                              >  1:288415/1‑128 (MQ=255)                                                                                              tCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAg                                                                              <  2:288415/128‑1 (MQ=255)                                                                                              tCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTG‑‑AAaacaa                                                       <  1:49936/149‑1 (MQ=255)                                                                                                ttATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTCCAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCCCCGTATTCATGGAGTTTTAATGTAATTG‑‑AAaacaccc                                                     >  2:488539/1‑146 (MQ=255)                                                                                                       agaGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTG‑‑AAAACAACTAAGCCCt                                              <  1:172421/147‑1 (MQ=255)                                                                                                            agagAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTG‑‑AAAACCACGGAGCCCGGAggt                                         >  2:545311/1‑148 (MQ=255)                                                                                                                      ccTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTG‑‑AAAACAACTAAGCCCTGAGGAATAAattatt                               <  1:638388/149‑1 (MQ=255)                                                                                                                       cTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAAACGCTTAAGAAAACCTATGAAATACTAGCAGGATAAAAACGACATACCACCGTATTCATGGAGTTTTAATGTAGTTA‑‑TAAACAACTAAGCCCTGACGAATAAatcattt                              >  2:24139/1‑149 (MQ=255)                                                                                                                        tAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTG‑‑AAAACAACTAAGCCCTGAGGAATAAattatttt                             >  1:348046/1‑149 (MQ=255)                                                                                                                            gATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTG‑‑AAAACAACTAAGCCCTGAGGAATAAattattttatta                         >  1:777030/1‑149 (MQ=255)                                                                                                                                gTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTG‑‑AAAACAACTAAGCCCTGAGGAATAAattattttattatttt                     <  1:384319/149‑1 (MQ=255)                                                                                                                                 tAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTG‑‑AAAACAACTAAGCCCTGAGGAATAAATTATTTTATTAttttt                    >  1:618909/1‑149 (MQ=255)                                                                                                                                           atcaGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTG‑‑AAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGct          >  1:600555/1‑149 (MQ=255)                                                                                                                                            tcaGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTG‑‑AAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGctt         >  1:530709/1‑149 (MQ=255)                                                                                                                                             caGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTG‑‑AACACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGGGcttc        <  2:660429/149‑1 (MQ=255)                                                                                                                                                  cATGCCTCTAGCATAGATTACGAAAACCTATGAAACACTGGCAGGATTAAAAAGACATTCCACCGCCTAC‑CGG‑GTTTTTAAACACTTGCCGAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCa   <  1:578740/149‑1 (MQ=255)                                                                                                                                                   aTGCTTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTG‑‑AAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAg  <  2:574848/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                      TAACATTTTATCTTATGACATACACCTCATGTTCGATGGGAAAATAATTATATTTTGCACAAATCATTCAGCCTCAAAGCATAATATGAAATTTCTTATCTCATAGCAGAGAAAGTCCCTAAAGATTGTAGAGGCGTCATCAGAACATGCCTCTACAATCGATTAAGAAAACCTATGAAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTG‑‑AAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAG  >  NC_000913_3_vch_tpiA/3632629‑3632923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.