New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	4162863 =	48 (1.060)	4 (0.090)	4/276	6.3	7.9%	noncoding (4162863/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	4162887 =	48 (1.120)					noncoding (4162887/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGATTATTACGCACACCCGCAATCATCGCC  >  NC_000913_3_vch_tpiA/4162739‑4163034                                                                                                                                                     |                                                                                                                                                    aGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCCGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAgg                                                                                                                                                     >  2:715121/1‑149 (MQ=255)         tCTGCCGGACGGTAGATCATTTTTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTTTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGc                                                                                                                                             <  2:245175/149‑1 (MQ=255)            aCCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGAACATTCAGATTCTGCGGGCGCAGTGCATCGCGCAGGGCCTCGGCTTc                                                                                                                                          >  1:147727/1‑149 (MQ=255)              tttaccgTATATCCTCTCTTCCCCTGCGAACGGCATACGTTCATCGATGTAATCCTGATCCAGCTCGATGTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCt                                                                                                                                        <  2:494836/143‑1 (MQ=255)              cTGAGGGTAGATCATGTCTTTACCGGCGACCGGCAGAGGTTCATGGATGCAATCCTGATCCAGCTCGATTTTGGTTTTCGGTGCCCGACCAATCAGATGCACATTCGGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCt                                                                                                                                        <  2:46333/149‑1 (MQ=255)              cTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCAAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCATGGCCTCCGCTTCCt                                                                                                                                        >  2:770827/1‑149 (MQ=255)                tccgttAGATCATCTCTTTCCCTTCGACCGTCAGACGTTTCTCTATTTAATCCTGATCAAGCTCGATTTTTCTTTTCCTTGCCCGACCAATCAGATTCACATTCAGATTCTGCGCGCGCATTGCATCGCGCAGGGCCTCCGCTTCCTGa                                                                                                                                      <  2:193342/144‑1 (MQ=255)                gACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTTATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGa                                                                                                                                      >  1:27095/1‑149 (MQ=255)                 aCGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGAc                                                                                                                                     <  1:273299/149‑1 (MQ=255)                        atcatcTCTATCCCTGCGACCGGCAGACGTTACTCGATGTAAACCTGATACAGCTCGATATCAGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGGATCTGCGCGCGCAGTGCATCGCTCAGGACGCCCGCCTCCCGTCGCCACtc                                                                                                                              >  2:457383/1‑149 (MQ=255)                           atcTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGCCGCCGCccatc                                                                                                                           >  1:278324/1‑149 (MQ=255)                           atcTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACtcatc                                                                                                                           >  2:154010/1‑149 (MQ=255)                                tttCCGTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCa                                                                                                                      >  2:680330/1‑149 (MQ=255)                                    ccTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTGCGCTTCCTGACGCCACTCATCATCCAGctc                                                                                                                  >  1:206262/1‑148 (MQ=255)                                     cTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGcttc                                                                                                                 >  1:108843/1‑149 (MQ=255)                                        cGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATGAGATGCACATTGAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCCCTCATCTTCCGGattctgc                                                                                                              >  1:119865/1‑147 (MQ=255)                                          atcGGCAGACCTCCACCGATGCAATCCTGATCCAGCTCGATTTTGGTTTGCGTTGGCCGACCAATCAGATGCACATTCAGATTCTGCGCTCGTAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATg                                                                                                            <  2:416118/147‑1 (MQ=255)                                                    gTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAgg                                                                                                  >  1:492892/1‑149 (MQ=255)                                                        aTCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACAATCAGATTCTGCGCGCGCAGTGCATCCCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGCTTcagcagtgcaa                                                                                              >  2:670404/1‑144 (MQ=255)                                                          cGATGTAATCCTGATCCAGCTCGATTTGGGTTTTCGTTGCTCGTCCAAGGAGATGCACCTTCAGATGCTGTTGGCGCGGTGCATCGGGCAGGGGGTCCGCAACCTGACGCGACTCATCATCCAGCTTCTTAGGGTATAGCTGGGAAacc                                                                                            >  2:379029/1‑149 (MQ=255)                                                           gATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAacca                                                                                           <  2:396787/149‑1 (MQ=255)                                                             tGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAaccacc                                                                                         <  1:154010/149‑1 (MQ=255)                                                             tGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAaccacc                                                                                         <  2:108843/149‑1 (MQ=255)                                                               tAAACCTGAACCAGCTCGAGTTTTTTTTCCGGTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTTCATCGCGCAGGGCCTCCGCTTCCCGACTCCACTCATCATCCAGCTTCTTATGGGATAGCAGGGAAACCACCGc                                                                                       <  2:124616/149‑1 (MQ=255)                                                                 aTCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCt                                                                                     >  1:531792/1‑149 (MQ=255)                                                                    cTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGAt                                                                                  <  1:584541/149‑1 (MQ=255)                                                                      gATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTa                                                                                <  1:352323/149‑1 (MQ=255)                                                                         ccAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTc                                                                             >  1:71818/1‑149 (MQ=255)                                                                          cAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCa                                                                            <  1:456919/149‑1 (MQ=255)                                                                          cAGCTCGATTTTGGTTTCCGTTGCCCGACCAATCAGATGCACATTCAGATTCTCCGCGCGCAGTGCATCGCGCAGGCCCCCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGACTACCCa                                                                            <  2:609040/149‑1 (MQ=255)                                                                            gCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAgt                                                                          <  1:715121/149‑1 (MQ=255)                                                                                  ttttGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCCGTGTAGTg                                                                    >  1:414542/1‑149 (MQ=255)                                                                                    ttGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCTCAGTTCATCGCGCAGGGCCTCCGCTTCCTCACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAg                                                                  <  2:173324/149‑1 (MQ=255)                                                                                     tGGTTTTCGTTGCCCGACCAATCAGATTCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCACCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAgg                                                                 <  2:313178/149‑1 (MQ=255)                                                                                        ttttCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTa                                                                       <  1:284550/140‑1 (MQ=255)                                                                                        ttttCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTa                                                                       >  2:284550/1‑140 (MQ=255)                                                                                          ttCGTTGCCCGACCAATCAGATGCACATTCAGGTTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTgatc                                                            >  1:139136/1‑149 (MQ=255)                                                                                             gTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGATaatcaat                                                         >  1:383782/1‑149 (MQ=255)                                                                                                                 cacaTTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTc                                                                             >  2:669200/1‑109 (MQ=255)                                                                                                                 cacaTTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTc                                                                             <  1:669200/109‑1 (MQ=255)                                                                                                                    aTTCAGATTCTGCGCGCGCAGTGCATCGCGCCCCCCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGaa                                  >  1:543324/1‑149 (MQ=255)                                                                                                                    aTTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACATGTGGCGCAGaa                                  >  1:600324/1‑149 (MQ=255)                                                                                                                      tCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACg                                >  1:118216/1‑149 (MQ=255)                                                                                                                         gATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGa                             <  1:509492/149‑1 (MQ=255)                                                                                                                               gcgcgcgcAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGAttatta                       <  1:222299/149‑1 (MQ=255)                                                                                                                                 gcgcgcAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGTACGGGATTATTACg                     <  1:680330/149‑1 (MQ=255)                                                                                                                                   gcgcAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGATTATTACGca                   <  2:71818/149‑1 (MQ=255)                                                                                                                                          gCAGCGCGCAGGGCCTCCGCTTCCTGAAGACTCTCATCCTCCACCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGATTATTACGCACACCCGc            <  1:733246/149‑1 (MQ=255)                                                                                                                                             tCGCGCAGGGTCTCCGCTTCCTGACGCAACGCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGATTATTACGCACACCCGCAat         <  2:315226/149‑1 (MQ=255)                                                                                                                                                  cAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGATTATTACGCACACCCGCAATCATCg    <  1:203947/149‑1 (MQ=255)                                                                                                                                                    gggCCTCCGCCTCCTGACGCCCCTCATCATTCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGATTATTACGCACACCCGCAATCATCGcc  <  1:490787/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AGCTGTTTTCTACCTGACGGTAGATCATCTCTTTCCCTGCGACCGGCAGACGTTCATCGATGTAATCCTGATCCAGCTCGATTTTGGTTTTCGTTGCCCGACCAATCAGATGCACATTCAGATTCTGCGCGCGCAGTGCATCGCGCAGGGCCTCCGCTTCCTGACGCCACTCATCATCCAGCTTCTTATGGTATAGCAGGGAAACCACCGCCTGATTACTCAGTGTAGTGAGGTAATCAATCTGGAACAACTTGTGGCGCAGAACGGGATTATTACGCACACCCGCAATCATCGCC  >  NC_000913_3_vch_tpiA/4162739‑4163034

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.