| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_vch_tpiA | 3,815,837 | Δ124 bp | [rph]–[rph] | [rph], [rph] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_vch_tpiA | 3815837 | 3815960 | 124 | 32 [0] | [0] 32 | [rph]–[rph] | [rph],[rph] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 3815836 | 0 (0.000) | 31 (1.060) | 28/284 | 0.2 | 100% | noncoding (3815836/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 3815961 = | 0 (0.000) | noncoding (3815961/4641682 nt) | repeat_region | repeat region | |||||
ATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_vch_tpiA/3815690‑3815836‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCC > NC_000913_3_vch_tpiA/3815961‑3816108 ATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATCCTTTTGCTCGTCGTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATG < 1:482923/149‑1 CAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGATCATC > 2:286894/1‑149 TAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGT < 1:94137/149‑1 CTGCTTGCTAAGTGGAACTTCAATCAAACGGCGGTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCCTCCGTCGGCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGT < 2:85806/149‑1 CTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAACAGGAGTCTAAACATCCTCCTT‑AAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT > 1:119465/1‑149 CTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTATACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGG > 1:76096/1‑149 GCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATATTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGGTCATCAATACGTTCATGTCGGT‑GTCTGag > 1:129374/1‑147 CGCAACTTCAATAAACTGGCGCTGATATGGTTTCCTGCCTTCGCTCCTCATTTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAATTCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGG < 1:175586/149‑1 GCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTCACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGC > 1:217607/1‑149 CAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCA < 1:17718/149‑1 AATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTT < 2:161265/149‑1 ATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTCCTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCCCCCGTCTTCCTCCATCACTACCCTCCTGTCGGT‑CCCTGCGACAGACTCTTC > 2:147726/1‑149 AACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAAC > 2:195797/1‑149 CTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCG > 1:369951/1‑149 CTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCGTCACCGTT > 1:166845/1‑149 ctTCATATTATTTTTCTAGAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCCGTCATTACTACGTTCATGTCTGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGAGCGCAAACCGCTTCGCCGTTCA < 2:12169/147‑1 CTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTAAAAT‑ACGCTGGTGGTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCAC > 1:504136/1‑149 TCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATT > 1:465940/1‑149 ACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCCCCGTTCACAATTCCGA > 2:285993/1‑149 CTTTTCCACACACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGAC < 1:132360/149‑1 ttaTACAGACAAAAAAAAGGCGACTCATCAGTCGTTGTAAAAATCATGCGCCCGTCTTCGTTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGA > 2:508407/4‑149 ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCCTGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCCCAATTCCGACAGAAACTGCGG > 1:173905/1‑149 ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAAC < 1:410915/96‑1 ACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAAC > 2:410915/1‑96 GACTCATCAGTCGCCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGACGTTCCCAATTCCGACAGAAACTGCGGCTACCATCCCATT > 1:33410/1‑149 cacccGTCTCCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCCTTTCTCTAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCTTCCCTTTCATC < 2:236765/144‑1 tcggtTTAAAAATCATGCGCCCGTCTTCGGTCATCACTTCGTTTATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGGCAGAAACTGCGGCTACCATCCCTTTCATCGGATTG < 2:476712/144‑1 CCTTAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTT > 1:279913/1‑149 TTAAAAATCATACGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGGCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCATTCATCGGATTGGTTTT > 2:357145/1‑149 TAAAAATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTC < 2:59958/149‑1 ATCATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTT < 2:217607/149‑1 ATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCC > 1:287735/1‑149 ATTTCAGCGTAAACTCGCCAAACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_vch_tpiA/3815690‑3815836‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGT‑CTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCGCTTCGCCGTTCACAATTCCGACAGAAACTGCGGCTACCATCCCTTTCATCGGATTGGTTTTCAGCTTGCC > NC_000913_3_vch_tpiA/3815961‑3816108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |