New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	1068445 =	26 (0.890)	4 (0.140)	4/272	3.6	10.6%	noncoding (92/98 nt)	RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP92 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913_3_vch_tpiA	4249453 =	43 (1.540)					noncoding (103/125 nt)	REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAA  >  NC_000913_3_vch_tpiA/4249305‑4249594                                                                                                                                                     |                                                                                                                                              gTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACATGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGCTa                                                                                                                                               >  1:405418/1‑149 (MQ=255)       cTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGt                                                                                                                                         >  2:126351/1‑149 (MQ=255)          cGGTGGCTAGATAGAAATCTGGTGAAGATAGCAAAACCTGGGCCGGAGAAGGCGTTTACGCCGGATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGGCAAATGTAGGCCGGATAAGGCGTTTa                                                                                                                                      <  1:149209/149‑1 (MQ=25)            gTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTAcg                                                                                                                                    >  1:197657/1‑149 (MQ=255)             tGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTAcgc                                                                                                                                   <  1:202513/149‑1 (MQ=255)                  aGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCAt                                                                                                                              >  1:94966/1‑149 (MQ=255)                         aaTCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCAGCATTCGGCAACCAACGCCGCATGCGACGCTTGCGCGACTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAt                                                                                                                       >  1:464371/1‑149 (MQ=255)                           tCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATaa                                                                                                                     >  1:139560/1‑149 (MQ=255)                              ggtggtAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGTCGTTTACGCCGCATCTGGCATaaaaa                                                                                                                  >  1:66369/1‑149 (MQ=255)                              ggtgggAATAGCAAGAGCGGGGCCGGATAGGGCGTATGCGTCTCCTTCGGCAACCAACGCTTGATGCGACGCTTGCGGGTCTTATCAGGCCTATAACGGCTGTCAAATGTAGGCGGGATAAGGCGTGTGCGCCGCATCCGGCATaaaaa                                                                                                                  <  2:406872/149‑1 (MQ=255)                               gtggtAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGCTAAGGCGTTTACGCCGCATCCGGCATAAAAAc                                                                                                                 >  1:92045/1‑149 (MQ=255)                               gtggtAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAc                                                                                                                 <  2:139560/149‑1 (MQ=255)                               gtggtAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAc                                                                                                                 <  1:213265/149‑1 (MQ=255)                                 ggtAATCGCAAAACCTGGGCCGGATAAGGCGTTTGCGCCGAATTCGGCAATCAACGCCTGATGCGACGATTGCTCGTCTTCTCAGTCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAg                                                                                                               <  1:251942/149‑1 (MQ=21)                                    aaTAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGAAGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGTCCGGGTAAAGCCTTTAGGCCCAATCCGCCATAAAAACCGGtt                                                                                                            >  2:280852/1‑149 (MQ=25)                                       aGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTc                                                                                                         <  2:489085/149‑1 (MQ=255)                                              ccTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGCCGCTTGCGCGTCTTATCAGGCCTACACCGGCTGTCAAACGTAGGCCGGATAAGGCGTTTACGCCGCATCCGCCATAACAACAGGTTATCATTATCt                                                                                                  >  2:311145/1‑149 (MQ=25)                                                tGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGa                                                                                                >  1:509447/1‑149 (MQ=255)                                                 gggCCGGAGAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGGCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGaa                                                                                               <  1:189484/149‑1 (MQ=255)                                                  ggCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTACCCGGCCTACAACGGCCGTCAAATGTAGGCCGGATACGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTCTCCGaaa                                                                                              >  2:83253/1‑149 (MQ=21)                                                             gCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGACGAAAGc                                                                                   >  1:324913/1‑149 (MQ=255)                                                             gCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTAACACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACCCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGATAGGGGCTAAAGc                                                                                   >  1:228765/1‑149 (MQ=25)                                                                   aCGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCctct                                                                             <  1:512279/149‑1 (MQ=255)                                                                          aTTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATc                                                                      <  1:27892/149‑1 (MQ=255)                                                                             cGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCggg                                                                   <  1:115163/149‑1 (MQ=255)                                                                                   ccaacGACTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAgc                                                             <  1:157661/149‑1 (MQ=255)                                                                                    caacGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGTCTCTCTGATTATAGGGTTTAgcg                                                            >  1:351576/1‑149 (MQ=255)                                                                                         ccTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTa                                                       >  2:13828/1‑149 (MQ=255)                                                                                                 gACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTgg                                               >  2:103928/1‑149 (MQ=255)                                                                                                    gCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCTCGCTATTGCCTGGCTa                                            >  1:197511/1‑149 (MQ=255)                                                                                                         cgcgTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCt                                       <  1:126351/149‑1 (MQ=255)                                                                                                          gcgTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTg                                      >  1:348485/1‑149 (MQ=255)                                                                                                          gcgTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTg                                      <  1:300667/149‑1 (MQ=255)                                                                                                                 aTCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCa                               >  2:244958/1‑149 (MQ=255)                                                                                                                        cTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTg                        >  1:208995/1‑149 (MQ=255)                                                                                                                        cTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTAATGATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTg                        >  1:330213/1‑149 (MQ=255)                                                                                                                         tACAACGGCTGTCAAATGTAGGCCTGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGa                       <  1:69509/149‑1 (MQ=255)                                                                                                                         tACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATACAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGa                       >  1:100342/1‑149 (MQ=255)                                                                                                                         tACAACGGCTGCCAAAGGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAGGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGa                       <  2:94966/149‑1 (MQ=255)                                                                                                                                    tCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGACATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCACTATTGCCTGGCTACCGCTCAGCTCCACATTTTGAGGTGAAAAcga            >  2:69965/1‑147 (MQ=255)                                                                                                                                      aaaTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaatg          >  1:441189/1‑149 (MQ=255)                                                                                                                                             gtgtggAGAAGTCGTTTACGCTGCATTCGGCATAAAAACAGGTTGTTATTATCTGAAAGGGGCGAAAGCCCCTCTTATTATCGGGTTTAGCGTGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaatgaaaatga   <  2:147498/145‑1 (MQ=255)                                                                                                                                             ggCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCt                                                 >  2:478384/1‑103 (MQ=255)                                                                                                                                             ggCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCt                                                 <  1:478384/103‑1 (MQ=255)                                                                                                                                              gCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaatgaaaatgaa  >  2:132687/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                              GTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAA  >  NC_000913_3_vch_tpiA/4249305‑4249594

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.