mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_vch_tpiA | 4,296,090 | 0 | C | T | 20.0% | 69.3 / 16.3 | 40 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 184 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 1207790 = | 28 (0.860) | 5 (0.170) | 5/252 | 3.4 | 17.3% | noncoding (11571/15193 nt) | cryptic prophage e14 | cryptic prophage e14 |
| ? | NC_000913_3_vch_tpiA | 1209619 = | 23 (0.800) | noncoding (13400/15193 nt) | cryptic prophage e14 | cryptic prophage e14 | |||||
| * | ? | NC_000913_3_vch_tpiA | 4614162 = | 55 (1.690) | 5 (0.160) | 5/266 | 3.6 | 8.2% | noncoding (4614162/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 4614193 = | 60 (1.970) | noncoding (4614193/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 3648122 | 36 (1.110) | 5 (0.160) | 5/268 | 3.6 | 13.3% | noncoding (3648122/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 3648138 | 31 (1.010) | noncoding (3648138/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 2549563 | NA (NA) | 5 (0.160) | 5/270 | 3.6 | 18.5% | noncoding (98/98 nt) | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP176 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_tpiA | = 4235454 | 22 (0.710) | noncoding (4/77 nt) | REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_vch_tpiA | = 1285189 | 30 (0.920) | 5 (0.160) | 5/266 | 3.6 | 14.9% | noncoding (1285189/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 1285193 | 29 (0.950) | noncoding (1285193/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 339757 = | NA (NA) | 5 (0.160) | 5/270 | 3.6 | 18.5% | noncoding (1/358 nt) | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913_3_vch_tpiA | = 4235454 | 22 (0.710) | noncoding (4/77 nt) | REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
| * | ? | NC_000913_3_vch_tpiA | 4090599 = | 26 (0.800) | 5 (0.160) | 5/274 | 3.7 | 14.1% | noncoding (4090599/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 4090628 = | 36 (1.150) | noncoding (4090628/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 2729630 = | NA (NA) | 5 (0.160) | 5/274 | 3.7 | NA | noncoding (2729630/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 2729652 = | NA (NA) | noncoding (2729652/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 2728214 = | NA (NA) | 5 (0.160) | 5/276 | 3.7 | NA | noncoding (2728214/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 2728240 = | NA (NA) | noncoding (2728240/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 226729 | 7 (0.220) | 5 (0.160) | 5/276 | 3.7 | 42.4% | noncoding (226729/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 2728240 = | NA (NA) | noncoding (2728240/4641682 nt) | repeat_region | repeat region | |||||