New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	2035286 =	26 (0.550)	7 (0.160)	6/262	5.3	20.3%	noncoding (2035286/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	2035318 =	31 (0.710)					noncoding (2035318/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.

TTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTT  >  NC_000913_3_vch_tpiA/2035140‑2035426                                                                                                                                                   |                                                                                                                                             ttGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGc                                                                                                                                            >  1:84532/1‑149 (MQ=255)             tCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTcc                                                                                                                                <  2:320706/149‑1 (MQ=255)                           aaCGTCGATAATTTATACAAAGGAAAAGGCATCGCTATCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAg                                                                                                                  <  1:759751/149‑1 (MQ=255)                                      cTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAGCTGCACACTAGACTGAGTTCGTCCCTCATCGAACTTAGGCTTTTTTAtt                                                                                                       >  2:723231/1‑149 (MQ=255)                                       atCTACCCAGAAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCCTAGTCTACAAGTTCTAATCAGTCAACTCGCTGTGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTg                                                                                                      <  1:277271/148‑1 (MQ=255)                                        tCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTCGTCTACCAGTTCGAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTAAGATCGCCCCTGATCGACATCAGGCTTTTTTTTTgt                                                                                                     >  2:172863/1‑148 (MQ=255)                                                       gCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGGTGCGGCGTGTTACTGTAAAAATGAACACTAGCCTGAGTTCGTCGCGCATCGAACTCAGGCTGTGTTATTGGCATTTCATCTCCGTc                                                                                      >  1:282080/1‑149 (MQ=255)                                                          tCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGc                                                                                   >  2:541483/1‑149 (MQ=255)                                                                 cGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCacac                                                                            >  1:628831/1‑149 (MQ=255)                                                                       tatCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAAtt                                                                      <  2:679875/149‑1 (MQ=255)                                                                         tCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTAtt                                                                                                       >  1:137922/1‑114 (MQ=255)                                                                         tCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTAtt                                                                                                       <  2:137922/114‑1 (MQ=255)                                                                          cGTTGCTGTGGGTTTAGTCTACCAGTTCGAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGACCACTAGCCTGAGTTCGTCCTTCATTGAACTCAGGCTGTTTGCTTTGCATTTCACCTCCATCTGGCGCTGACGTAATTGcc                                                                   <  2:725270/149‑1 (MQ=255)                                                                                          gTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACa                                                   <  2:522131/149‑1 (MQ=255)                                                                                           tCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAg                                                  >  1:768241/1‑149 (MQ=255)                                                                                                cAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCGCATCAAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGCTACAGcccac                                             >  2:82744/1‑145 (MQ=255)                                                                                                   ttCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTAc                                          >  1:88166/1‑149 (MQ=255)                                                                                                   ttCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTACCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCCATACAGCACCTTAc                                          >  2:164344/1‑149 (MQ=255)                                                                                                         tCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTTGCATTTCATCTCCATCTGCGCCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGcc                                    <  2:658626/149‑1 (MQ=255)                                                                                                                acccGCTGCGGCGGGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCACATCGCAGTCTGTTTTTGTTATTTGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTg                             <  2:715767/146‑1 (MQ=255)                                                                                                                      tGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACCCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACaa                       <  2:628831/149‑1 (MQ=255)                                                                                                                       gcggcgTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAAt                      <  2:768241/149‑1 (MQ=255)                                                                                                                        gggcgTGTTACTGGAAAACTGAACACTAGCCTTAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGTCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATa                     <  2:27712/148‑1 (MQ=255)                                                                                                                               ttACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGTCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCaa              <  1:12585/149‑1 (MQ=255)                                                                                                                               ttACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCaa              >  1:29721/1‑149 (MQ=255)                                                                                                                                           tGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCtt  <  1:323045/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                             TTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTTCTAATCAGTCAACTCGCTGCGGCGTGTTACTGTAAAACTGAACACTAGCCTGAGTTCGTCCCTCATCGAACTCAGGCTTTTTTATTGGCATTTCATCTCCATCTGCGGCACACGCAATTGCCGAAGCATATCGATACAGCACCTTACCCTGCCCCTCCTGGCACAATAACATCAACCAGCTACTCTT  >  NC_000913_3_vch_tpiA/2035140‑2035426

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.