New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	411180 =	42 (0.890)	6 (0.130)	6/272	5.5	13.3%	noncoding (103/191 nt)	REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913_3_vch_tpiA	411213 =	38 (0.840)					noncoding (136/191 nt)	REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP35 (repetitive extragenic palindromic) element; contains 4 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTGGTTTCGCCAGCACCGGA  >  NC_000913_3_vch_tpiA/411039‑411324                                                                                                                                              |                                                                                                                                                 ggCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATg                                                                                                                                           <  1:387530/149‑1 (MQ=255)            tAAAAAACGTAGTCAATTGGCGCATCAGGCCTGATGAGACGCTTGCCGCGTCTGATCAGGCCTACAAAAGGTGCCAGAACCGTATGCCGGATAAGCCGTTCACGCCGCACCCGGCAATAAGTTCTCCGATGCCTCATGCGACGCTTGcc                                                                                                                                <  2:166057/149‑1 (MQ=255)               aaaaCGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCCGTCAGGCCGCCTCCCGCAATAACGGCTCCCATGCCCCGTCCGACGCTTGccaca                                                                                                                             >  1:12838/1‑146 (MQ=18)                   cGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCtt                                                                                                                         <  1:656033/149‑1 (MQ=255)                    gTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACCCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTCGCCGCGTCtca                                                                                                                        >  1:650752/1‑147 (MQ=255)                     tAGGGAGTTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCGGGCCTACAAAAGGTGCTAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTTCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTAt                                                                                                                       <  2:430899/149‑1 (MQ=25)                       ggCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCAGCAATAGGTGCTCCGATGCCTGATGCGACGCCTGCCGCGTCTTATCa                                                                                                                     >  2:662452/1‑149 (MQ=255)                        acAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGACAAGGCGTTCACGCCCCATCCGGCAATCAGTGCTCCGATGCCTTATGCGACGCCTGCCGCGTCCTTTCAg                                                                                                                    >  2:12384/2‑149 (MQ=25)                               gcgcATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCt                                                                                                                                               >  2:396205/1‑115 (MQ=255)                               gcgcATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCt                                                                                                                                               <  1:396205/115‑1 (MQ=255)                                  cctcatGCCTGATGCGAGGCTTGCCGCGGCTGAGCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGGATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCaaaa                                                                                                          <  2:107996/147‑1 (MQ=37)                                      atGCCTGAGGCGCCGCTTGCCCCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAAtgtg                                                                                                      <  2:401140/149‑1 (MQ=255)                                         ccTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCCACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCa                                                                                                   >  1:287200/1‑149 (MQ=255)                                         ccTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCGGATGGGACGCTTGCCGCGTCTTATCAGGCCCGCAAAATGTGCCa                                                                                                   >  1:110805/1‑149 (MQ=255)                                          cTGATGCGACGCTTGCCGCGTCTTAGCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAg                                                                                                  <  1:698740/149‑1 (MQ=255)                                                          cgcgTCTTACCAGGCCTACAAAAGGTGCCATATTCTCAAGCAGGAGAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGa                                                                                  <  1:364052/149‑1 (MQ=37)                                                             gTCTTATCAGGCCTACAAAGGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGTTTGCCGCGTCTTATCAGGCCTGCTTAAGTTGCCAGAACCGCGTAGGGCGGATaa                                                                               <  2:261513/149‑1 (MQ=37)                                                                ttATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGACCCGCGGAGGGCGGATCAGGc                                                                            >  2:220671/1‑149 (MQ=255)                                                                ttATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCCGATAAGGCGTTCACGCCGCATCCGGCCATAAGTGCCCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCACAACCGCGTAGGCCGGCTTAGGc                                                                            >  2:54954/1‑149 (MQ=37)                                                                ttACCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGc                                                                            <  2:563611/149‑1 (MQ=255)                                                                       gCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTTCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCCcg                                                                     >  1:311677/1‑149 (MQ=255)                                                                         cTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAg                                                                              >  1:330872/1‑138 (MQ=255)                                                                         cTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAg                                                                              <  2:330872/138‑1 (MQ=255)                                                                          tACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAAGGTGCCATAACCGCCTAGGGCGGATAACGCGTTCAcgccg                                                                  >  2:797123/1‑149 (MQ=255)                                                                                  gTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGc                                                          >  2:327539/1‑149 (MQ=255)                                                                                     ccAGAACCGTGGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCTTGATGCGCCGCTTGCCGCGCCTTATCCTGCCTGGCAAATGTGCCAGAACCGCGCAGGGCGGATAAGGCGTTCACGCCGCATCCAGCAAt                                                       >  2:91492/1‑149 (MQ=25)                                                                                     ccAGAACCGTAAGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAAt                                                       >  1:512506/1‑149 (MQ=255)                                                                                      cAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGAt                                                                                                                                            >  2:184924/1‑63 (MQ=255)                                                                                      cAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGAt                                                                                                                                            <  1:184924/63‑1 (MQ=255)                                                                                             gTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATg                                               <  2:259594/149‑1 (MQ=255)                                                                                                      aTAAGGCGTCCACGCCGCATCCGGCAATAACTGCTCCGATGCCTGTTGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCgag                                      <  2:110805/149‑1 (MQ=255)                                                                                                       tAAGGCGTTCACGCCGCATCCGGCAATAAGGGCTCCGATGCCTGTTGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCgaga                                     <  1:346753/149‑1 (MQ=255)                                                                                                                       cATCCGGCAATAAATGCACCGATGACGGATGCGACGCTTGGCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAg                     >  2:823757/1‑149 (MQ=25)                                                                                                                         tCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATaa                               >  2:259920/1‑137 (MQ=255)                                                                                                                         tCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATaa                               <  1:259920/137‑1 (MQ=255)                                                                                                                          ccGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATAAACAAAGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTgg                  <  1:24280/149‑1 (MQ=37)                                                                                                                           cGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTGGt                 >  1:388142/1‑149 (MQ=255)                                                                                                                            ggCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCACTGGtt                >  2:40278/1‑149 (MQ=255)                                                                                                                                aTAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTGGTTTCGc            <  2:101458/149‑1 (MQ=255)                                                                                                                                     tGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTGGTTTCGCCAGCa       <  1:220671/149‑1 (MQ=255)                                                                                                                                        taggATGCCTGATGCGAGGCTTGCCGCGTTTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATGAGGCGTTCACGCCGCATTCGGCAATAAGTAATGAGCACCGAGACTATAACCTATCCCAGTGGTTTCGCCAGCACCg    <  1:684870/146‑1 (MQ=255)                                                                                                                                        tCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTGGTTTCGCCAGCACCg    >  1:369313/1‑149 (MQ=255)                                                                                                                                          tgaggCCTGATGTGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGTATCCGGCAAGATGTAACGAGCACCGAGACTATAACCTACCCCAGTGGTTTCGCCAGCACCGGa  <  2:711071/145‑1 (MQ=25)                                                                                                                                              |                                                                                                                                                 GGCCACAAGAGTAAAAAACGTAGGCAATTGGCGCATCATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAATGTGCCAGAACCGCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTAATGAGCACCGAGACTATAACCTACCCCAGTGGTTTCGCCAGCACCGGA  >  NC_000913_3_vch_tpiA/411039‑411324

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.