Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_vch_tpiA 1,978,503 Δ776 bp insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_vch_tpiA 1978503 1979278 776 47 [0] [0] 48 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_vch_tpiA = 19785020 (0.000)46 (1.030) 40/270 0.1 100% noncoding (1978502/4641682 nt) repeat_region repeat region
?NC_000913_3_vch_tpiA 1979279 = 0 (0.000)noncoding (1979279/4641682 nt) repeat_region repeat region

TGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAA  >  NC_000913_3_vch_tpiA/1979133‑1979427
                                                                                                                                                  |                                                                                                                                                    
aaatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtat                                                                                                                                                    <  1:622717‑M2/3‑1 (MQ=255)
 aatgggtctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgtata                                                                                                                                                   <  1:520123‑M2/4‑1 (MQ=255)
  atgggtctttacacttatcgaagatttttcctaaatcgacgcaactgtactcgtcactaaacgcacatacaacggaggggggctgcgattttgaataatgcgtgatgcagatcacacaaaacacccaattacttaacataaatgTATaa                                                                                                                                                  >  2:384608‑M2/145‑149 (MQ=255)
       tctttacacttatctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgacgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCAt                                                                                                                                             >  2:333185‑M2/140‑149 (MQ=255)
                   tctaagatttttcctaaatcgacgcaactgtactcgtcagtacacgcacatacaagggaggggggttgcgattttttttaatgagtggtgcagattacgcaaaacagttaattattttacataaatgTATAAGTCATACttttgttttg                                                                                                                                 >  2:759679‑M2/128‑149 (MQ=255)
                    ctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatgacacaaaacactcaattacttaacataaataGATAAGTAATacttttgcttttg                                                                                                                                >  2:446333‑M2/127‑147 (MQ=255)
                    ctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                                <  2:452344‑M2/23‑1 (MQ=255)
                    ctaagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                                <  1:632988‑M2/23‑1 (MQ=255)
                     taagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg                                                                                                                               >  2:101962‑M2/126‑149 (MQ=255)
                      aagatttttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                                                                              >  2:110671‑M2/125‑149 (MQ=255)
                            tttcctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgacgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAttt                                                                                                                        <  1:333185‑M2/31‑1 (MQ=255)
                                ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt                                                                                                                    >  1:593391‑M2/115‑149 (MQ=255)
                                ctaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacataacataaaggGATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt                                                                                                                    >  1:778845‑M2/115‑149 (MQ=255)
                                cgaaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt                                                                                                                    <  2:812639‑M2/35‑1 (MQ=255)
                                 taaatcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATc                                                                                                                   >  1:1251‑M2/114‑149 (MQ=255)
                                     tcgacgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGtt                                                                                                               >  1:94799‑M2/110‑149 (MQ=255)
                                        acgcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaa                                                                                                            >  1:653234‑M2/107‑149 (MQ=255)
                                          gcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                                >  2:733148‑M2/105‑127 (MQ=255)
                                          gcaactgtactcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtcatgcagatcacacagaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTgg                                                                                                                                <  1:733148‑M2/23‑1 (MQ=255)
                                                gtcctcgtccctacacgaacatacaacggaggggggttgcgattttcaataatgcgtgatgcagatcacacaaaacactcatttacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttttt                                                                                                    <  2:131395‑M2/51‑1 (MQ=255)
                                                    tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                                                                              <  2:16360‑M2/25‑1 (MQ=255)
                                                    tcgtcactacacgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt                                                                                                                              >  1:16360‑M2/95‑119 (MQ=255)
                                                              acgcacatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTagcaa                                                                                      >  1:677822‑M2/85‑149 (MQ=255)
                                                                  acatacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAgcaagcaa                                                                                  >  1:76941‑M2/81‑149 (MQ=255)
                                                                    atacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaa                                                                                >  1:604691‑M2/79‑149 (MQ=255)
                                                                    atacaacggaggggggctgccattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTATCAAGCaaaa                                                                                <  2:473413‑M2/71‑1 (MQ=255)
                                                                     tacaacggaggggggctgcgattttcaataatgcgtgatgcagatcacacgaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa                                                                               >  1:223315‑M2/78‑149 (MQ=255)
                                                                      acaacggaggggggctgcgattttcgataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAAt                                                                              <  2:648275‑M2/73‑1 (MQ=255)
                                                                        aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGa                                                                            >  2:420878‑M2/75‑149 (MQ=255)
                                                                        aacggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGa                                                                            >  2:610629‑M2/75‑149 (MQ=255)
                                                                        aacggaggggggctgcaattttcaataatgcgagatgcagatcacgcaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTCTTAAAAAGTTTATCGATACGCTAGCAAGCAAAAATGa                                                                            >  2:647919‑M2/75‑149 (MQ=255)
                                                                          cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                          <  1:335822‑M2/77‑1 (MQ=255)
                                                                          cggaggggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGaaa                                                                          <  2:449802‑M2/77‑1 (MQ=255)
                                                                               gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGa                                                                     <  1:101962‑M2/82‑1 (MQ=255)
                                                                                ggggctacgattttcaataatgcgtgaagcagatgacacaaaacactcaattacttaacataaatgTAAAAGTCATGCTTTTGTTGTGGGGGTATTTCAATCTGTTAAAAAGTTTTTGGCTACGCTAGCAAGCAGAAATGAAacagcat                                                                    >  1:202060‑M2/67‑146 (MQ=255)
                                                                                     tgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATc                                                               <  2:653234‑M2/88‑1 (MQ=255)
                                                                                         attttcaataatgcatgatgaaaatcacaaaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTAAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGAAAAAATGAAACAGGAATAATCGaaa                                                           <  2:677822‑M2/92‑1 (MQ=255)
                                                                                            ttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATgg                                                        >  1:278431‑M2/55‑149 (MQ=255)
                                                                                                         gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcg                                               <  2:123959‑M2/104‑1 (MQ=255)
                                                                                                         gatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTgcg                                               >  1:123959‑M2/42‑145 (MQ=255)
                                                                                                              agatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCaa                                      <  1:110671‑M2/113‑1 (MQ=255)
                                                                                                                       aaaacactcaatttcttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCa                             <  2:580942‑M2/122‑1 (MQ=255)
                                                                                                                                        aacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTg            <  1:610629‑M2/139‑1 (MQ=255)
                                                                                                                                        aacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTg            >  1:163834‑M2/11‑149 (MQ=255)
                                                                                                                                         acataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAACAGGGATGTTCCGCACAGTCAAAATAACTCACCGTAAATCATCATCTGc           >  2:827443‑M2/10‑149 (MQ=255)
                                                                                                                                         acataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGc           <  2:604691‑M2/140‑1 (MQ=255)
                                                                                                                                               atgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaa     >  1:155782‑M2/4‑149 (MQ=255)
                                                                                                                                                  tataAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTataaataa  <  1:314451/149‑1 (MQ=255)
                                                                                                                                                  |                                                                                                                                                    
TGATGTCCGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGGAATAATCGAAATGGGATGTTGCGCACAGTCAAAATAACTCACCGTAAATAATCATCTGCTATAAATAA  >  NC_000913_3_vch_tpiA/1979133‑1979427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.