| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | = 1097113 | 26 (0.800) | 5 (0.160) | 5/266 | 3.6 | 23.5% | noncoding (1097113/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 1097455 | 8 (0.260) | noncoding (1097455/4641682 nt) | repeat_region | repeat region | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
TGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCG > NC_000913_3_vch_tpiA/1096970‑1097261 | tgCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGAc > 1:410849/1‑149 (MQ=11) aaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGTTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCgggg > 2:299063/1‑148 (MQ=17) aaaaaaGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCgggg < 1:299063/148‑1 (MQ=32) aaaGCCCGTACTTTCGTACGAGCTCTTCTTTACATGGAACGGTTAGAGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGCCCCCCGGTCGGGGCTtc > 1:265635/1‑149 (MQ=11) gTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCCGGGCTTCTCATccc > 2:379146/1‑149 (MQ=17) aCGAGCTCTTCGTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGgtgtgt < 2:3866/149‑1 (MQ=17) ttttcttTGAAGATGGCGGTGAGGGGTGGATTGACTCGCTTCGCTCGCCCTCCGGGCAGCCCGCTCACTGCGTCCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCCACCCCCGGACGGGGCTTCTCATCCCCCCGGTGTGTGCAATa < 2:551323/147‑1 (MQ=11) ggggATTGACTCGCTTCGCTCGCCCTGCTCGCAGCAGGGTCACGGCGGTAACGATCTGTCCACCTGGCTTAGGCCAGGTTGCGAGCCGCGGCCGTGGCATCTCAACCCCCCGGTGTGTGCAATACACGAAAAAAAAGCACGTACTTTct > 2:238076/1‑148 (MQ=2) ggggATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACAGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAGAAAAGCCCGTACTTTCg > 1:199830/1‑149 (MQ=25) gggATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCTGGTCGGGGCTTTTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGt < 1:302607/149‑1 (MQ=21) ttcgctCGCCCTGCGGGCCGCCCGCTCCATGCTTTCACGGTCTGTCCAACTTGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTcttctt < 2:199830/149‑1 (MQ=11) ctctgtcTGCGGGCAGGCCGCTCACTGAGTTCTCGGTCTGTAGAACTGGCTGTCGACTGTTGTGGACCCCTGGTCGGGGGTTCTCATGGCTGGGTTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTaaa < 2:481114/143‑1 (MQ=11) gcCCTGGGGGCAGCCCACTCACTGCGCTCACGGTATGTCCAACGGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGCCTTCTCATCCCCCCCGTCTCTAATCCCCTCTAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAatat < 2:374609/149‑1 (MQ=11) cccTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTCCTCACCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATg < 2:410849/149‑1 (MQ=25) aCGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCAGAACTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACtcgcttcg > 1:20506/1‑149 (MQ=255) tGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATata < 1:48577/70‑3 (MQ=14) tGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATata > 2:48577/1‑68 (MQ=18) tGTCCAACTGGCTGTCGCCAGTTGGCGACCCCCGGTCGGGGCTTCTCATCTTCCCACTCTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGcc < 1:238076/149‑1 (MQ=11) gTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGa < 2:361911/129‑1 (MQ=37) gTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGa > 1:361911/1‑129 (MQ=35) tCCAACTGGCTGTCGCCAGTTGTCGACCCACGATCGGGGCGTCGCGTCCGCGCGGGCTGTGCAATCGACGAAATAAAAGCCCGTACTTTCATACAAGCTCTTATTTAAATATTGCGGTGAGGGGGGGATTGACTCGCTTCACTCGCCCt > 2:371150/1‑149 (MQ=11) aaCTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGCGAGGGGGGCATTGACTCGCTTCCCTCGCCCTGCg > 2:456268/1‑149 (MQ=255) gCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCt > 1:89165/1‑149 (MQ=35) gCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCCCt > 2:201539/1‑149 (MQ=25) tatttgttgCCCCCCGGTGGGGGCTGCTCATGCCCCCGGGGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCa < 1:307976/146‑1 (MQ=11) gTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGGAAGAGGGGGATTGACTCGCTTCGCTCGCCCTCCGGGCAGCCCGCTCACTCCg > 2:40356/1‑149 (MQ=11) | TGCAATATACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCGTTCACGGTCTGTCCAACTGGCTGTCGCCAGTTGTCGACCCCCGGTCGGGGCTTCTCATCCCCCCGGTGTGTGCAATACACGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTGACTCGCTTCGCTCGCCCTGCGGGCAGCCCGCTCACTGCG > NC_000913_3_vch_tpiA/1096970‑1097261 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |