| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 2118491 = | NA (NA) | 5 (0.160) | 5/268 | 3.6 | NA | noncoding (26/186 nt) | REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences | REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences |
| ? | NC_000913_3_vch_tpiA | 4245170 = | NA (NA) | noncoding (49/126 nt) | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
GCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTT > NC_000913_3_vch_tpiA/2118344‑2118636 | gcAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTAt > 2:32329/1‑149 (MQ=255) cacgATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAATTAATTTCATTTTTTCCTCATAAATTTGATGCTAGGTGAGTCTGCGTTTGTTTTTTTCGTTGCTGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATc < 1:25868/146‑1 (MQ=255) aTGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGCTGCGACGCTGACGCGTCTTATCAGGc > 1:71168/1‑149 (MQ=255) gcgcTGTCGGCATGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTa < 1:459638/149‑1 (MQ=255) gcgcTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCTTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTa < 1:162832/149‑1 (MQ=255) cACGATTGCCGCAAGTGTGGTTGGGCAGAATAAGTAGTTTCATTTTTTCCTCATAAATTTGATGCCAGGTGGGGGTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGGTGCTACGCTGACGCGTCTTATCAGGCCTATAAGAACCgg > 2:566071/1‑148 (MQ=255) ttGGCGCAAGTGTGGTTGCCCATAATAAGTAATTTTATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGcaca < 2:81781/149‑1 (MQ=255) ttGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGcaca < 1:373946/149‑1 (MQ=255) attgtgGTTGCCTTTGATAAGTAATTTCGTTTTTTCCTCATAAATTTGATGCCAGGTGGGGCTGCGTTTGTTTTGTTCGTTGCGGCTTTTTGCCTGATGCGACGCGGACGCGTCTTATCAGGCCTACAAGTCCCGAGCACAGAACCGTa < 2:581862/147‑1 (MQ=25) gtgtGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCTAGGTGAGGCAGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCTTGATGCGCCGCTGACGCTTCTTATAAGGCCTACAAGACCAGATACCAGAAcagcag > 2:481632/1‑144 (MQ=255) gtgGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGa < 1:32329/149‑1 (MQ=255) aGAATAAGTAATTTCATTTTTTGCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCAGATGCGACGCTGACTCGTCTTATCAGGCCTACAAGACCCGATCACAGAACTGTAGGA‑CGGATAAGGc < 2:365848/149‑1 (MQ=255) aGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGc < 1:351090/149‑1 (MQ=255) aaTAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACACGAGCACAGAACCGTAGCC‑CGGATAAGGCGt > 2:240196/1‑149 (MQ=255) aaTAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTAAGACTGCATTAATATTGTTAGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGt > 1:15465/1‑149 (MQ=25) tAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCAcgc > 1:578484/1‑149 (MQ=255) tAATTTCATTTTGTCCTAATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTGGCCGCTTTTTGCCTGATGCGACGCTGAAGCGGCTTGTTTGACCTACAAAAACCCAACACAGAAACGTAGAA‑CTCATGAGGCGTTCAcgc > 2:56037/1‑149 (MQ=255) cATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCAcg < 2:16415/142‑1 (MQ=255) cATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCAcg > 1:16415/1‑142 (MQ=255) tcttAAATTTGATGTCACGTGAGGGTGTGTTTTTTTTGGTCGTTGCCGCGTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATTAGGCGTTCACGCCGCATCGGGCATTCAg < 2:31943/146‑1 (MQ=21) tCATAAATTTGATGCCAGGTGAGGCTGAGTTCATCGGTACCGGTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAg > 1:422858/1‑149 (MQ=18) aTAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTg < 2:103247/149‑1 (MQ=255) aTAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTg < 1:256820/149‑1 (MQ=255) aTAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTg > 1:50145/1‑149 (MQ=255) aTAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTg > 1:519040/1‑149 (MQ=255) ttttATGCCAGGTGAGGCGGCGTTTGTTTGGTTCGTTGCCGCGTTTTGCCTGATGCGACGCTGACGCATCTTATCCGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGa < 2:119681/149‑1 (MQ=25) tcgATGCCAAGTGAGGCTCCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGCTGCGACGCTGACGCGTCTTATCAGGCCCATAAGACCCAAGCACAGAACCGTAGGA‑CGGATAAGCCGTTCACGCCGCATCCGGCATTCAGTGCGTGAt < 2:380104/147‑1 (MQ=25) tGCCAGGTGAGGCTGCGTTTGTTTTCTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGTCCCTAGCACAGAACTGTAGGA‑CGGATAAGGCGTTCACGCCGCATCAGGCACTGAATGCCGGATGCgg < 1:523378/149‑2 (MQ=21) gTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGt < 1:212267/109‑1 (MQ=255) gTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGt > 2:212267/1‑109 (MQ=255) gTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGa < 1:353004/149‑1 (MQ=255) gTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGATCCCGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGa > 1:583853/1‑149 (MQ=255) gCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGt < 1:401777/149‑1 (MQ=255) gCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGACTACAAGACCCGAGCACAGAACCGTAGGATCGTACAA‑GCACCCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGt > 1:14044/1‑149 (MQ=25) ttttgttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTTTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGc < 1:132888/149‑1 (MQ=255) ttttgttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGc < 2:578484/149‑1 (MQ=255) tttgttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCg > 1:422133/1‑126 (MQ=255) tttgttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCg < 2:422133/126‑1 (MQ=255) tttgttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGcc > 1:501345/1‑149 (MQ=255) gTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGt > 2:17292/1‑149 (MQ=255) gTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCAAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGt > 1:459139/1‑149 (MQ=255) gTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAAGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAAGCGTTAAAGCAGCATCCGGCATTCAGTGCCTAATGCGACGCTGAAGCGTCTTATCAGGCCTACAGGt > 1:105396/1‑149 (MQ=25) tcTTTTTGCCTGCTGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCATGCCGCATCCGGCATTCAGTGTCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAg < 1:306889/148‑1 (MQ=255) gCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAg > 1:272767/1‑149 (MQ=255) tctGCCTGTGGCGACGCTGACGCTGCTGATTGGGGCAACATTACGCGCGCACAGTGCCGTAGTA‑CGGATAAGGCTGTCACGCCGCATCCGTCATCTAGCTGCTGATGCGACGCTGACGCGTCTTATCATGCCTACAGGTCCCGAGcaca < 2:14044/147‑1 (MQ=12) gCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGTCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGaa < 1:410211/149‑1 (MQ=255) ccTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCTCGAACAAAGAAc > 1:283231/1‑149 (MQ=255) aTGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCATACAGGTCCCGAGCACAGAACCGTa < 1:17292/149‑1 (MQ=255) ctaCGCTGAGGTGTGTTATCAGGTCTACATGACCCGAGAACTGAACCGTAGGA‑CGGATAAGGCGTTTACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGa < 2:495886/147‑1 (MQ=25) gtcagcgTCGCATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTcc < 2:137603/120‑1 (MQ=255) aCGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGATAACGCCGCATCCGGCAATCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCAACAGGTCCCGAGCACAGAACCGTAGGACGGATAAg > 1:557778/1‑149 (MQ=255) cTTATCAGGCCTACAAGCCCCGAGCACAGAACCGTAGGG‑AGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGTATAAGGCGttt < 1:116522/149‑1 (MQ=255) cTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGttt > 2:311344/1‑149 (MQ=255) cTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGttt > 2:311088/1‑149 (MQ=255) | GCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGA‑CGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGAGCACAGAACCGTAGGACGGATAAGGCGTTT > NC_000913_3_vch_tpiA/2118344‑2118636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |