New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	3701908 =	36 (0.760)	4 (0.090)	4/272	6.7	10.6%	noncoding (3701908/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	3701949 =	33 (0.730)					noncoding (3701949/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGATGCGCTCGCGG  >  NC_000913_3_vch_tpiA/3701764‑3702050                                                                                                                                                 |                                                                                                                                               ttAAAGCCTGGCTGATTTTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGt                                                                                                                                            <  2:634487/149‑1 (MQ=255)           gCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGt                                                                                                                                  <  1:3313/149‑1 (MQ=255)            cTGATTCTGCTGTAAGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTGTCTGAATTAACGCTGCGGAGTTTCATCCTTCTCAACAGCAAAAGAACCTACCAGTTGAccgccatc                                                                                                                                 >  2:5372/1‑146 (MQ=255)             tGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAg                                                                                                                                <  2:624985/149‑1 (MQ=255)               aTTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTc                                                                                                                              <  1:432903/149‑1 (MQ=255)                ttCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTCCCAGTTCACCGCCGTAGtat                                                                                                                             >  2:482635/1‑147 (MQ=255)                     ctgTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAg                                                                                                                        >  1:76165/1‑149 (MQ=255)                        tACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTGGCtc                                                                                                                     >  1:739405/1‑148 (MQ=255)                        tACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCtc                                                                                                                     >  2:592392/1‑148 (MQ=255)                           ggCCTTTTGCTATGCTTGTCGCCACTGTGGAAGCTGATTGAGTAATCCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCAGCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCgg                                                                                                                  <  1:297384/149‑1 (MQ=255)                           ggCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACGGGAGCGCATGGCCCCGGGATTGTGAGTTAACGCTGCGGATTTTCATCCTGGCCAACAGCAAAACAAGGTACCAGTTGACCGCCGTAGTCTTTTAGCTGCgg                                                                                                                  >  2:672108/1‑149 (MQ=255)                                        ggtgggtgCCACTGTCGAAGCTGATTGAGTAACGCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTGTCATCCTGATCAACAGCAAACCAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTg                                                                                                     <  2:381679/142‑1 (MQ=255)                                          ttGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCa                                                                                                   >  2:473656/1‑149 (MQ=255)                                           tGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAg                                                                                                  <  1:709166/149‑1 (MQ=255)                                               gCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCACCTGGGTGCAGGGGc                                                                                              >  1:129576/1‑149 (MQ=255)                                               gCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGc                                                                                              >  1:129537/1‑149 (MQ=255)                                                ccACTGATGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGAATTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGTGTGCAGGGGcc                                                                                             >  2:714652/1‑149 (MQ=255)                                                                     tAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCACCACCAAAACAAGCTACCACTTGACCGCCGTAGTCTTTTCGCTACGGCTGACACTCGGTGCGGGGACCGAAGCGCCGCCGACAGCggcc                                                                        >  2:148358/1‑147 (MQ=255)                                                                           ggAGCGCATGGCCTCGGTTTTGGGAGTAAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCGGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGaa                                                                  <  2:351378/149‑1 (MQ=255)                                                                                gcATGGCCCCGGTTTGGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGATTGTAGCGCCGACGACAGCGGGCGTTGAAGgcgc                                                             <  2:813674/149‑1 (MQ=255)                                                                                   tGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAAc                                                          >  2:545767/1‑149 (MQ=255)                                                                                        ccGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAATCTTTTAGCTGCGGCTGCAACTGGGAGCAGGGGCCGAAGCGCCGACAACACCGGGCGCTGAAGGCGCAGCCcgcc                                                     >  2:490670/1‑147 (MQ=255)                                                                                                        aCGCTGCGGATTTTCATCCTCATCAACCGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTGAAAGGCGCAACCCGGCGCTGGGATCAgcgcgc                                     >  2:702989/1‑144 (MQ=255)                                                                                                          gCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGAccgccg                                                                                                                                   >  2:250706/1‑53 (MQ=255)                                                                                                          gCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGAccgccg                                                                                                                                   <  1:250706/53‑1 (MQ=255)                                                                                                                 aTTTTCACCCAGATCAACCGCAAAATAAGCTACCAGTTGGCCGCCGTAGTCCTTTAGCTGCGGCTGCAACTGGTTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTCGTAGtt                            <  2:386593/149‑1 (MQ=255)                                                                                                                     tCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCCACCGGGTGCAGGGGCCGGAGCGCCGACGACTGAGGGCGTTGAAGGCGCCACCCGGCGGTGGATTCAGTAGGCTTGGTAGtttcgc                        >  2:658730/1‑145 (MQ=255)                                                                                                                         ccTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTg                    >  1:558072/1‑149 (MQ=255)                                                                                                                           tGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAg                  >  2:427168/1‑149 (MQ=255)                                                                                                                            gATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGCAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGCGGGCTCGGTAGTGAACCGcagccc                 >  2:447652/1‑144 (MQ=255)                                                                                                                            gATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGCAGCCCCCACCACCCGGGGGGTGCAGTGGAGTTGGTAGTTCACCGCTGAGc                 >  1:368495/1‑149 (MQ=255)                                                                                                                              tCAACGGCAAAACAAGCTACGAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGCAGCGTCGACGACAGCGGGCGTTGAAGGCGCAACCCGGTGGTGGATTCAGTGGGCTTGGTAGTTCACCGCCGAGCtt               <  2:603107/149‑1 (MQ=255)                                                                                                                                aaCAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGCTTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGa             >  2:253845/1‑149 (MQ=255)                                                                                                                                 aCAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGAt            <  2:558072/149‑1 (MQ=255)                                                                                                                                      aaaaCAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGATGCGCt       >  1:732182/1‑149 (MQ=255)                                                                                                                                           aaGCGAGCAGTTGACCGGCGTAGTCTTTTAGGTGCGGCTGCAACGGGGTGCAGGGGCCGAAGCGACGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGGGGATTCCGTGCGCTTGGTAGTTCACCGCTGAGCTTGATGCGCTCgcgg  <  2:355566/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                               TTAAAGCCTGGCTGATTCTGCTGTACGGCATTTTGCTATGCTTGTCGCCACTGTTGAAGCTGATTGAGTAAACCGGAGCGCATGGCCCCGGTTTTGTGAGTTAACGCTGCGGATTTTCATCCTGATCAACAGCAAAACAAGCTACCAGTTGACCGCCGTAGTCTTTTAGCTGCGGCTGCAACTGGGTGCAGGGGCCGAAGCGCCGACGACAGCGGGCGTTGAAGGCGCAACCCGGCGGTGGATTCAGTGGGCTTGGTAGTTCACCGCTGAGCTTGATGCGCTCGCGG  >  NC_000913_3_vch_tpiA/3701764‑3702050

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.