New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 3090373	42 (0.880)	5 (0.110)	5/272	6.1	11.9%	noncoding (3090373/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 3090384	34 (0.750)					noncoding (3090384/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAAATTAACTGGCAGGGCAAAAAAGGCGTTGTTGA  >  NC_000913_3_vch_tpiA/3090236‑3090531                                                                                                                                                     |                                                                                                                                                    aGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAg                                                                                                                                                     >  2:172184/1‑149 (MQ=255)     ggTTGGGAAATAACCATCTGAACTATCAGGAACTTTCCGGATCTGGCTGATTGCAGACCAAAACAGCTTTCGCTACGGTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCgca                                                                                                                                                 <  1:427089/149‑1 (MQ=255)      gTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGGGCgcag                                                                                                                                                >  1:434508/1‑149 (MQ=255)                     tCTGAACTATTAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCCCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGTTGGTACTGCGGGCAGCATTTTccggcccgt                                                                                                                                 >  2:77328/1‑148 (MQ=255)                       tGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTCATACGGTGGGACTGGGCGCAGCATTTTCCGGAACGGCg                                                                                                                               >  1:736812/1‑149 (MQ=255)                         aaCTATCAGGAACGTTCCTGATCTGGCTGATTGCATACTAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGtt                                                                                                                             <  2:325329/149‑1 (MQ=255)                          aCTATCAGGTACTTTCCTGATCCGGCCGACTGCATACCAACACAGCTTGCGTTACGTTGTTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTGTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTg                                                                                                                            <  2:520691/149‑1 (MQ=255)                            tATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTAACGTTATGGGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGc                                                                                                                          >  1:825535/1‑149 (MQ=255)                                  gAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGTAgg                                                                                                                    >  1:339289/1‑149 (MQ=255)                                                tggttaaTTGCCTACCAAAACACGTTTCGCTACGTGGCTGGCCCCTCCTAACCCTGAGTCCGCGTTGCAGCTTGCTTTGCCTATGGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGttttt                                                                                                      <  2:513725/143‑1 (MQ=255)                                                   cTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTtctc                                                                                                   >  1:246081/1‑149 (MQ=255)                                                    tGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTAATGAGGGCAGCATTTTCCGGACCGGCGTTGGCCGAAGGGATGAGTAGTTTTTCTCa                                                                                                  >  1:46181/1‑149 (MQ=255)                                                     gATTGGATACAAAAACAGCTTTCGGTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAg                                                                                                 <  2:291767/149‑1 (MQ=255)                                                          cATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCCGGCGaa                                                                                            >  1:214980/1‑149 (MQ=255)                                                           aTACCAAAACAGCTTTCGCTACGTTGCTGGTTTGTTTGATCACCGATTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGaaa                                                                                           <  2:387569/149‑1 (MQ=255)                                                                aaaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATCTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCAGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCcgc                                                                                      <  1:238276/149‑1 (MQ=255)                                                                 aaaCAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCcgcg                                                                                     >  1:57951/1‑149 (MQ=255)                                                                        tttCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTaa                                                                              <  1:172184/149‑1 (MQ=255)                                                                              tACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTcc                                                                        >  2:472879/1‑149 (MQ=255)                                                                                 gTTGCTTGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACg                                                                     <  2:329643/149‑1 (MQ=255)                                                                                   tGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAATGCCGCGGCGGTAAAAGTCCACGCt                                                                   <  1:727443/149‑1 (MQ=255)                                                                                          tCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCCCAGGCGAAAGCCGCCGCGGTAAAAGTCCACGCTGTcgccc                                                            >  2:190302/1‑147 (MQ=255)                                                                                               ttAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGt                                                       <  2:660667/149‑1 (MQ=255)                                                                                                    gagaaGTAAGTGATGTACCGTTATTTGTCTATTTCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGtt                                                  <  2:76111/145‑1 (MQ=255)                                                                                                    acGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGtt                                                  >  1:835800/1‑149 (MQ=255)                                                                                                            aGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTgg                                                                                                                           <  2:428390/68‑1 (MQ=255)                                                                                                            aGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTgg                                                                                                                           >  1:428390/1‑68 (MQ=255)                                                                                                              tGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGGAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGa                                        <  1:556409/149‑1 (MQ=255)                                                                                                                    aCCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTaaa                                  >  1:434537/1‑149 (MQ=255)                                                                                                                      cGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAAAt                                >  1:492815/1‑149 (MQ=255)                                                                                                                       gTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGAGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATggagcatt                               >  1:788953/1‑142 (MQ=255)                                                                                                                                 tATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAAATTAACTGGCAgg                     <  2:434537/149‑1 (MQ=255)                                                                                                                                 tATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAAATTAACTGGCAgg                     >  1:267334/1‑149 (MQ=255)                                                                                                                                  aTTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCCGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAAATTAACTGGCAggc                    >  2:75663/1‑148 (MQ=255)                                                                                                                                  aTTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAACTTAACTGGCAggg                    >  1:663932/1‑149 (MQ=255)                                                                                                                                    tgcgggggtggtACGGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAAATTAACTGGCAGGGCa                  <  2:104378/143‑1 (MQ=255)                                                                                                                                                    aGCGCAGCATTTTGCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGGCAAATTCACTGGCAGGGCCAAAAAGGAGttgttgt  >  2:108097/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AGCTGGTTGCGAAATAACCATCTGAACTATCAGGAACTTTCCTGATCTGGCTGATTGCATACCAAAACAGCTTTCGCTACGTTGCTGGCTCGTTTTAACACGGAGTAAGTGATGTACCGTTATTTGTCTATTGCTGCGGTGGTACTGAGCGCAGCATTTTCCGGCCCGGCGTTGGCCGAAGGTATCAATAGTTTTTCTCAGGCGAAAGCCGCGGCGGTAAAAGTCCACGCTGACGCGCCCGGTACGTTTTATTGCGGATGTAAAATTAACTGGCAGGGCAAAAAAGGCGTTGTTGA  >  NC_000913_3_vch_tpiA/3090236‑3090531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.