Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_vch_tpiA 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_vch_tpiA 257908 258683 776 48 [0] [1] 49 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_vch_tpiA = 2579070 (0.000)45 (0.810) 40/262 0.5 100% noncoding (257907/4641682 nt) repeat_region repeat region
?NC_000913_3_vch_tpiA 258684 = 0 (0.000)noncoding (258684/4641682 nt) repeat_region repeat region

CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGT  >  NC_000913_3_vch_tpiA/258545‑258830
                                                                                                                                           |                                                                                                                                                  
taaaaatttgctaaattttgacaatttggtaaaacagttgcatcacaaaaggagctagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggaccgaatattcgtaatggtcAGTccaaaaa                                                                                                                                           >  2:239327‑M2/140‑147 (MQ=255)
     atttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaattacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc                                                                                                                                      >  1:204844‑M2/135‑149 (MQ=255)
     atttgctaaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATc                                                                                                                                      <  1:111159‑M2/15‑1 (MQ=255)
           taaattttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCt                                                                                                                                >  1:894271‑M2/129‑149 (MQ=255)
              attttgccaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt                                                                                                                             <  1:547294‑M2/24‑1 (MQ=255)
               ttttgccagttgggtaaaacagttgcatcacaacaggagagagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                                                                                                                            <  2:204844‑M2/25‑1 (MQ=255)
               ttttgacaatttgctaaaacagctgaaacaacacaagatatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCttttt                                                                                                                            <  1:922614‑M2/25‑1 (MQ=255)
                    ctaatttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGAtt                                                                                                                       <  2:967616‑M2/30‑1 (MQ=255)
                     acatttggtaaaacagttgaatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcacttggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTg                                                                                                                      <  2:137590‑M2/31‑1 (MQ=255)
                       atttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc                                                                                                                    <  2:602091‑M2/33‑1 (MQ=255)
                       atttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTc                                                                                                                    <  1:22982‑M2/33‑1 (MQ=255)
                        tttggtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaaaagcagattgatcaaaaaatttaccgcgctaggcccgtatatgcgtgaaggtaAGTGCAGAGATAAGCGATTGTTTTTCGATTGTCt                                                                                                                   >  1:609431‑M2/116‑149 (MQ=255)
                            gtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                                                                                                                       >  1:667570‑M2/112‑125 (MQ=255)
                            gtaaaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                                                                                                                       <  2:667570‑M2/14‑1 (MQ=255)
                               aaacagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTa                                                                                                            <  1:77333‑M2/41‑1 (MQ=255)
                                  cagttgcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGc                                                                                                         <  2:135201‑M2/44‑1 (MQ=255)
                                       gcatcacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCaa                                                                                                    >  2:420634‑M2/101‑149 (MQ=255)
                                           cacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt                                                                                                                             >  1:732578‑M2/97‑120 (MQ=255)
                                           cacaacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCtttt                                                                                                                             <  2:732578‑M2/24‑1 (MQ=255)
                                             caacaggagatagcaatgacgttaccgagtggacacccgaagagcagattgatcaaaaaatttaccgcactaggaccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGaa                                                                                              <  2:172221‑M2/55‑1 (MQ=255)
                                                                               ccccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtgg                                                            <  1:464375‑M2/89‑1 (MQ=255)
                                                                                cccgaagcggagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGAGAATCGATTCTTTTTCGATTGTCTGGCTGCATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtggt                                                           <  2:534082‑M2/90‑1 (MQ=255)
                                                                                 ccgaagagcagattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCtggtg                                                          >  2:931905‑M2/59‑149 (MQ=255)
                                                                                          agattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCt                                                 <  1:723182‑M2/100‑1 (MQ=255)
                                                                                           gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTg                                                <  1:72598‑M2/101‑1 (MQ=255)
                                                                                           gattgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTg                                                >  2:634052‑M2/49‑149 (MQ=255)
                                                                                             ttgatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGa                                              >  1:758933‑M2/47‑149 (MQ=255)
                                                                                             aagatcataaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGAAAAGATAATCGATTCTATTTCGATTGTGTGGCTGTATGCGTCAACGTGAAACCGGCACCGAAAGTGAGTGTATTCTGGAGCTGGTGGATAGAGctgaa                                              >  2:499090‑M2/47‑147 (MQ=255)
                                                                                               gatcaaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAg                                            <  2:901017‑M2/105‑1 (MQ=255)
                                                                                                  caaaaaatttaccgcactaggcccgtatattcgtgaagataAGTGCAAAGATAATCGATTCTTTTTCGATTGGCTGGCTGTATGCGTCAACGTGAACCCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAgcgc                                         <  2:656735‑M2/108‑1 (MQ=255)
                                                                                                   aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGa                                                                                               >  2:548104‑M2/41‑94 (MQ=255)
                                                                                                   aaaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGa                                                                                               <  1:548104‑M2/54‑1 (MQ=255)
                                                                                                    aaaaatttaccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGCAACAGGCACCGGAAGTCCGTGAACTATCGGGCCTGTTGATGGACCTGGCAGCGCAg                                       >  2:168669‑M2/40‑149 (MQ=255)
                                                                                                        atttaccgcactaggcccgtatattcgtgaaggtcAGTGCAAAGATAATCGATTCATTTTCGACTGTCTGGCTGTCTGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAAt                                   <  1:928054‑M2/114‑1 (MQ=255)
                                                                                                         tgtaccgcactaggcccgtattttcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATc                                  <  1:67410‑M2/115‑1 (MQ=255)
                                                                                                             ccgcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGt                              <  1:737904‑M2/119‑1 (MQ=255)
                                                                                                              cggactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGtt                             <  2:574016‑M2/120‑1 (MQ=255)
                                                                                                               gcactaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCGGGTGGATGGAGCTGGAAGCGCAGGAACCCCGttt                            >  1:643691‑M2/29‑149 (MQ=255)
                                                                                                                cactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                                                                                                                       >  2:159664‑M2/28‑41 (MQ=255)
                                                                                                                cactaggcccgtatattcgtgaaggtaAGTGCAAAGATAAt                                                                                                                                       <  1:159664‑M2/14‑1 (MQ=255)
                                                                                                                  ctaggcccgtatattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTAc                         <  2:894271‑M2/124‑1 (MQ=255)
                                                                                                                             tattcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTAcc              >  2:586469‑M2/15‑149 (MQ=255)
                                                                                                                                tcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGc                                                                                                                <  2:328671‑M2/37‑1 (MQ=255)
                                                                                                                                tcgtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGc                                                                                                                >  1:328671‑M2/12‑48 (MQ=255)
                                                                                                                                tcgtGAAGGGAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGGTGTATGCGTCAACGTGAAACCGGACCCGGCTGTGCGTGGCATCGTGGGCTGGTGGATCTAATTGGAAGCGCAGGAATCCTGGTTGACCTACAGTTACCAGt           <  2:1003067/146‑1 (MQ=255)
                                                                                                                                  gtgaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGttt         >  2:929889‑M2/10‑149 (MQ=255)
                                                                                                                                    gaaggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGGAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTgg       <  2:670863‑M2/142‑1 (MQ=255)
                                                                                                                                      aggtaAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTc     >  2:538804‑M2/6‑149 (MQ=255)
                                                                                                                                         taAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGGAACCGGCGCCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGt  <  1:929889‑M2/147‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                                  
CGGCGGTGCTTTTGCCGTTACGCACCACCCCGTCAGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGAAGGTAAGTGCAAAGATAATCGATTCTTTTTCGATTGTCTGGCTGTATGCGTCAACGTGAAACCGGCACCGGAAGTGCGTGAATTCTGGGGCTGGTGGATGGAGCTGGAAGCGCAGGAATCCCGTTTTACCTACAGTTACCAGTTTGGTCTGT  >  NC_000913_3_vch_tpiA/258545‑258830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: