New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 2897751	30 (0.780)	4 (0.110)	4/276	5.1	12.5%	noncoding (2897751/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 2897791	27 (0.730)					noncoding (2897791/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGGTGAAGATTTTTTGCCGACCAATATGGTCGGAGATCCACCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCC  >  NC_000913_3_vch_tpiA/2897605‑2897889                                                                                                                                                   |                                                                                                                                           aaGGTGTAGATTTTTTGCCGACCAATATGGTCGGAGATCCACCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAACCTGAATAATGGCgca                                                                                                                                          >  2:253983/1‑147 (MQ=255)      gAAGATTTTTTGCCGACCAAGATGGTCGGAGATCCACCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCaa                                                                                                                                     >  2:250881/1‑149 (MQ=255)       aaGATTTTTTGCCGACCAATATGGTCGGAGATCCACCCAAGAACCAGCCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACCGCGTCAGTTGCATGGCGGGCGTAAGCTGAACAATAGCGCACCCaaa                                                                                                                                    >  2:405633/1‑148 (MQ=255)                tGCCGACCAATATGGTCGGAGATCCACCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAACCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCCTGGCCGGCGTAAGCTGAATAATGGCCGAACCAATGACGCCgag                                                                                                                           >  2:656452/1‑149 (MQ=255)                         atatGGTCGGAGATCCACCCAAGAACCCGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGACGTCAGTTGCATGGCGGGCGTAAGCTGAATAAAGCCGTAACCAATGACGCCGAGAACATAccc                                                                                                                  >  2:153495/1‑149 (MQ=255)                             gggcGGAGATCCACCCAAAAACCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCg                                                                                                              <  1:669064/146‑1 (MQ=255)                             ggTCGGAGATCCACCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCg                                                                                                              <  1:75341/149‑1 (MQ=255)                             ggTCGGAGATCCACCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGGCg                                                                                                              <  1:335124/149‑1 (MQ=255)                               tCGGAGATCCACCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGt                                                                                                            >  1:309018/1‑149 (MQ=255)                                  gagaTCCACCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGAGCACCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAg                                                                                                         <  1:531312/149‑1 (MQ=255)                                    gaTCCACCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGCGCGCCGAGCGGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGgt                                                                                                       <  1:235737/149‑1 (MQ=255)                                     aTCCACCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAACCGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATCACGCCGCGAACATAACCGTCTGACAGgtg                                                                                                      >  2:221620/1‑149 (MQ=255)                                     aTCCACCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGgtg                                                                                                      >  1:44179/1‑149 (MQ=255)                                         aCCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTgcg                                                                                                  >  1:232517/1‑149 (MQ=255)                                          cccAAGAACTAGGCTGCTAAGGATCAAACCAAGGAGCGCCGAGCCGCCGATAATTCCCGCCATAAACGGTGTCAGTTGCATGGCGGGCGGAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTgcgc                                                                                                 <  1:266218/149‑1 (MQ=255)                                                aaCCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAg                                                                                           >  2:157956/1‑149 (MQ=255)                                                    aggcgcccAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATCCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAg                                                                                       <  2:309018/143‑1 (MQ=255)                                                     gacTGCCAGGGAACAACCCAGGGAGCGGGGAGCCGCCGTGCATGCCCGCCATACACGGCGTCAGTGCCATGTCGGGCGTAAGCTGAATAATGGTTTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAgc                                                                                      <  2:504122/147‑1 (MQ=255)                                                          ccAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGTCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCgcagc                                                                                 <  2:588381/149‑1 (MQ=255)                                                                  cAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGc                                                                         >  1:229306/1‑149 (MQ=255)                                                                                      cgccgATCATCCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGt                                                     <  1:45869/149‑1 (MQ=255)                                                                                             aaTTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTAAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAatcat                                              <  2:551315/148‑1 (MQ=255)                                                                                                  ccGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCAtt                                         >  1:340620/1‑149 (MQ=255)                                                                                                       aTAAACGGGGCCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCAc                                    <  1:221620/149‑1 (MQ=255)                                                                                                                  cAGTTGCATGGCGGGCGTAAGCTGAATAAGGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAgtgt                         <  1:385577/149‑1 (MQ=255)                                                                                                                         aTGGAGGGCGGAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCGGAAAGTGAGCGCAGCAATTCGGCAGTGAAAACGGTTAAGCGGGAAATCATCCATTCGCCCCGGTGAAGTGTTCATCtt                  >  2:621346/1‑149 (MQ=255)                                                                                                                          tGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACGTAACCGTCGGTCAGGTGTGAGCCGAAAGTTAGCGCAGCAATGCGGCAGTGAAAAAGGTTAAGCGGTAAAGCATCCATTCGCACCGGTGAAGTGTTCATCttt                 >  2:491768/1‑149 (MQ=255)                                                                                                                            gcgcacgTAATCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGGGTGCGCCGAACGTGAGCGCAGCAATGCGACAGTAAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGCGCTCATCTTTAc               >  2:347379/6‑149 (MQ=255)                                                                                                                                 cgTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCtt          <  1:157956/149‑1 (MQ=255)                                                                                                                                       cTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGt    >  1:279078/1‑149 (MQ=255)                                                                                                                                       cTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGt    >  1:472734/1‑149 (MQ=255)                                                                                                                                         gAATAATGGCGTAACCCATGACGCCGAGAACATAACCGTCGGTCAGGTGGGCGCCGAAGGGAAACACAGAAACGCTGCAGTGAACACGGTTACACGGTAACACATACATGCCCCCCGGTGAATCGTTCATCTTTACCCCCGCACTGTcc  >  2:371958/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                           AAGGTGAAGATTTTTTGCCGACCAATATGGTCGGAGATCCACCCAAGAACCAGGCTGCCAAGGAACAAACCAAGGAGCGCCGAGCCGCCGATCATTCCCGCCATAAACGGCGTCAGTTGCATGGCGGGCGTAAGCTGAATAATGGCGTAACCAATGACGCCGAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCC  >  NC_000913_3_vch_tpiA/2897605‑2897889

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.