New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 4542720	23 (0.600)	6 (0.170)	6/266	4.0	19.2%	noncoding (4542720/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	= 4543016	29 (0.810)					noncoding (4543016/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACG  >  NC_000913_3_vch_tpiA/4542575‑4542866                                                                                                                                                  |                                                                                                                                                   gTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTTGGGCCAAAc                                                                                                                                                 >  1:109812/1‑149 (MQ=255)    ataCCGCAAGTAAAGCTGCTAGTTTTGGCGGATTAGGGGAAAGAAATAATGTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCattttga                                                                                                                                              <  2:165429/149‑7 (MQ=255)       ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAGGAGAAGAGGATTGATTTAACTTATTGAGAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa                                                                                                                                           >  1:621282/1‑149 (MQ=255)                       tCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGATTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTa                                                                                                                           >  1:3820/1‑149 (MQ=255)                               ccGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGTCATTTGGGGCCAAACTGTCCTTATCATAGATTAGTTACGTGtttt                                                                                                                   >  1:180220/1‑149 (MQ=255)                                    ttATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtctc                                                                                                              <  2:611943/149‑1 (MQ=255)                                      aTGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCaa                                                                                                            <  1:43452/149‑1 (MQ=255)                                            aagaaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAAACAATTGGGGCCAAACTGTCCATATCATAAATAAGTAACGTATTTTTTCTCAAGCaaaa                                                                                                      >  1:155772/1‑149 (MQ=255)                                                aataatCCCATAAACGAAAAATGAGAAAGAAAAGAGTTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATGGGGGACAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAat                                                                                                  <  2:477372/149‑1 (MQ=255)                                                   aaactcAAAAACCAAAAATTAAAAAAAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATCAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTACTTTTTCTTAAGCATAAAAATAtt                                                                                               <  2:553403/146‑1 (MQ=255)                                                          tAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAAc                                                                                        >  1:101839/1‑149 (MQ=255)                                                             aCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGAc                                                                                     <  1:3146/149‑1 (MQ=255)                                                               gAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa                                                                                                     >  1:376010/1‑131 (MQ=255)                                                               gAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaa                                                                                                     <  2:376010/131‑1 (MQ=255)                                                                      tAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCAt                                                                            <  2:185686/149‑1 (MQ=255)                                                                                  tgggttGATGTAACTTATTTATAATCAAGTTAAAAAAACAAAAAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGGATTTTTTATCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGa                                                                <  2:174267/145‑1 (MQ=255)                                                                                           ttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAATATCTTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAat                                                       <  1:535266/149‑1 (MQ=255)                                                                                             aaCTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTTTTAAGTTTAAAAATATTAAAAAACGAAAGAGAGCGTCTAACTGTTTGATATGTAAatta                                                     >  2:660555/1‑149 (MQ=255)                                                                                              acctATTGATAATAAATTTAAAAAAACAAATAAATACAAGACAATTGGGGCTAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAattat                                                    <  2:507775/146‑1 (MQ=255)                                                                                                                   aaaaaCAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTca                               <  2:101839/149‑1 (MQ=255)                                                                                                                         aaataaatACAAGTCAATTCGGGCCAAACTTGCCATATCAAAAATAAGTTACGTAGTTTTTCTCAAGCATAAAAATAATAAAAAAAGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCAc                         <  2:280623/149‑1 (MQ=255)                                                                                                                           ataaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCt                       <  2:109812/149‑1 (MQ=255)                                                                                                                              aataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTTTTATTTTTTAAAATGTTAAAAAACGACAAAAAGAATCTAACTGTTTGTGGAATAAATTATTACTATTGTCAATTAATTTCAAATAAcataca                    >  2:315942/1‑144 (MQ=255)                                                                                                                                                ccAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACg  >  1:572926/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                   GTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGTAAAGCTAACG  >  NC_000913_3_vch_tpiA/4542575‑4542866

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.