New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	1941271 =	29 (0.760)	3 (0.090)	3/252	5.2	10.4%	noncoding (1941271/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	1941287 =	26 (0.770)					noncoding (1941287/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCATAGGTTCGGGTTTCACGACGAGACACTTCCCAGGTGAGGCGCTGCAGTTCGCCGTCCGCGGTTAATGTCCAGGAGAGTTGTTGACCGATTTTCAGGTTACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTG  >  NC_000913_3_vch_tpiA/1941142‑1941422                                                                                                                                                  |                                                                                                                                        tCATAGGTTCGGGTTTCACGACGAGACACTTCCCAGGTGAGGCGCTGCAGTTCGCCGTCCGCGGTTAATGTCCAGGAGAGTTGTTGACCGATTTTCAGGTTACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCatat                                                                                                                                       <  1:232942/148‑1 (MQ=255) tCATAGGTTCGGGTTTCACGACGAGACACTTCCCAGGTGAGGCGCTGCAGTTCGCCGTCCGCGGTTAATGTCCAGGAGAGTTGTTGACCGATTTTCAGGTTACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCatat                                                                                                                                       >  2:232942/1‑148 (MQ=255) tCATAGGTTCGGGTTTCACGACGAGACACTTCCCAGGTGAGGCGCTGCAGTTCGCCGTCCGCGGTTAATGTCCAGGAGAGTTGTTGACCGATTTTCAGGTTACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATc                                                                                                                                      >  1:374641/1‑149 (MQ=255)   aTAGGTTCGGGTTTCACGACGAGACACTTCCCAGGTGAGGCGCTGCAGTTCGCCGTCCGCGGTTAATGTCCAGGAGAGTTGTTGACCGATTTTCAGGTTACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCaa                                                                                                                                    <  1:448496/149‑1 (MQ=255)   aTAGGTTCGGGTTTCACGACGAGACACTTCCCAGGTGAGGCGCTGCAGTTCGCCGTCCGCGGTTAATGTCCAGGAGAGTTGTTGACCGATTTTCAGGTTACGCAATTCTTTGTCAGCCGCAGCCAGTTGGGTGATATCACCCATATCaa                                                                                                                                    <  2:533657/149‑1 (MQ=255)                         gaCACTTCCCAGGTGAGGCGCTGCAGTTCGCCGTCCGCGGTTAATGTCCAGGAGAGTTGTTGACCGATTTTCAGGTTACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAAtgct                                                                                                              <  2:32863/149‑1 (MQ=255)                            acTTCCCAGGTGAGGCGCTGCAGTTCGCCGTCCGCGGTTAATGTCCAGGAGAGTTGTTTACCGATTTTCAGGTTACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACAGATTAGGAATgctgct                                                                                                           >  1:339001/1‑149 (MQ=255)                               tCCCAGGTGCGGCGCTGCAGTTCGCCGTCCGCGGTTAATGTCCAGGAGAGTTGTTGACCGATTTTCAGGTTACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAATGCTGCTTAg                                                                                                        <  1:101067/149‑1 (MQ=255)                                     gTGAGGCGCTGGAGTTCGCTGTCCGCGGTTAATGTCCAGGAGAGTTGTTGACCGATTTTCAGGTTACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATc                                                                                                  <  2:95911/149‑1 (MQ=255)                                          gcgcTGCAGTGCGCCGTCCGCGGTTAATGTCCAGGAGAGTTGTTGACCGATTTTCAGGTTACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAg                                                                                             <  2:540325/149‑1 (MQ=255)                                                            cgcgGTTAATGTCCAGGAGAGTTGGTGACCGATTTTCAGGTTACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCAt                                                                           <  2:102132/149‑1 (MQ=255)                                                            cgcgGTTAAGTGCCGGGAGATTTGTTGACCGATTTTCAGGTTACGCAATTCTTTGTCGGCCGCAGGCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCAt                                                                           <  2:210562/149‑1 (MQ=255)                                                                  tAATGTCCAGGAGAGTTGTTGACCGATTTTCAGGTTACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGCAAACAACATATTCATGCACGc                                                                     <  2:594787/149‑1 (MQ=255)                                                                       tCCAGGAGAGTTGTTGACCGATTTTCAGGTTACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAacaaca                                                                                  <  2:207348/131‑1 (MQ=255)                                                                       tCCAGGAGAGTTGTTGACCGATTTTCAGGTTACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAacaaca                                                                                  >  1:207348/1‑131 (MQ=255)                                                                               agTTGTTGACCGATTTTCAGGTTACGAAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGc                                                        <  1:542766/149‑1 (MQ=255)                                                                                 ttggtgCCCGATTTTTAGGTTACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGa                                                      <  2:339001/149‑1 (MQ=255)                                                                                        ccGATTTTCAGGTTACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTc                                               <  2:374641/149‑1 (MQ=255)                                                                                           atgttCAGGTTACGCAATTGTTTTTCGGTCGCAGCCAGTTGGGTGATATCCCCCATATCAATAACACCCTGTTTGAGTTTCATCAGCAGCGGTTCTCTAGTACCGGCAATATATTCATGCACGCCCGCTTCGCCGGCGATTTTGTCATc                                            <  2:143443/146‑1 (MQ=255)                                                                                                    ttACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATCCCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTc                                   >  1:300510/1‑149 (MQ=255)                                                                                                           aTTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGa                            >  2:55879/1‑149 (MQ=255)                                                                                                              cTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATg                         <  2:531791/149‑1 (MQ=255)                                                                                                                   tCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTg                                >  2:529929/1‑137 (MQ=255)                                                                                                                   tCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTg                                <  1:529929/137‑1 (MQ=255)                                                                                                                         gCAGCCAGTTGGGTGATATCACCCATATCAAAACAATCCGGATTGGGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCAtcttc              <  1:629838/149‑1 (MQ=255)                                                                                                                           aaccAGTTGTGTGACATCCGCCATATCAATGCCATACTGATTCAGAATGCTTCCTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTGGTCATCCAGTTCGTCCTGGGGAATGGCTTCATcttctt            <  2:267762/147‑1 (MQ=255)                                                                                                                                     gggagaccacacaGATCAATACCATGCTGATTGAGAACGCTGCTTATCGTACCGCCAGTGGAAACAACATATTCATGCCCGGCCTGTTCACCGGCGATTTTTTCATCCCGTTCGTCCTGGGGAATGGCTTCATCTGCTTGTGCAGCTTg  <  2:261050/142‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                        TCATAGGTTCGGGTTTCACGACGAGACACTTCCCAGGTGAGGCGCTGCAGTTCGCCGTCCGCGGTTAATGTCCAGGAGAGTTGTTGACCGATTTTCAGGTTACGCAATTCTTTGTCGGCCGCAGCCAGTTGGGTGATATCACCCATATCAATACCATACTGATTGAGAATGCTGCTTAGCGTATCGCCAGTGGAAACAACATATTCATGCACGCCCGCTTCACCGGCGATTTTGTCATCCAGTTCGTCCTGGGGAATGGCTTCATCTTCTTGTGCAGCTTG  >  NC_000913_3_vch_tpiA/1941142‑1941422

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.