mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4532507 | 69 (0.240) | 5 (0.020) | 4/230 | NT | 4.3% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 161 (0.600) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 3806753 = | 296 (1.020) | 3 (0.010) | 3/230 | NT | 1.1% | coding (663/1221 nt) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN‑binding |
| ? | CP009273 | = 3806749 | 276 (1.020) | coding (659/1221 nt) | dfp | fused 4'‑phosphopantothenoylcysteine decarboxylase/phosphopantothenoylcysteine synthetase, FMN‑binding | |||||
| * | ? | CP009273 | 3399761 = | 379 (1.300) | 4 (0.020) | 4/224 | NT | 1.1% | coding (486/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit |
| ? | CP009273 | = 3399757 | 362 (1.370) | coding (482/1350 nt) | accC | acetyl‑CoA carboxylase, biotin carboxylase subunit | |||||
| * | ? | CP009273 | = 1288655 | 381 (1.310) | 6 (0.020) | 5/248 | NT | 1.6% | intergenic (‑277/‑328) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | CP009273 | 2095230 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 1288652 = | 381 (1.310) | 8 (0.030) | 7/248 | NT | 2.1% | intergenic (‑274/‑331) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | CP009273 | = 2283592 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 1203252 = | 151 (0.520) | 5 (0.020) +C |
5/246 | NT | 3.9% | coding (296/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205070 = | 100 (0.340) | pseudogene (6/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 360286 | NA (NA) | 4 (0.010) +AATTC |
4/238 | NT | 1.5% | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3416618 = | 265 (0.910) | intergenic (+65/+164) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon | |||||
| * | ? | CP009273 | 101848 = | 281 (0.960) | 4 (0.020) | 4/224 | NT | 1.5% | coding (57/1152 nt) | ftsZ | GTP‑binding tubulin‑like cell division protein |
| ? | CP009273 | = 101844 | 271 (1.030) | coding (53/1152 nt) | ftsZ | GTP‑binding tubulin‑like cell division protein | |||||
| * | ? | CP009273 | 19796 = | NA (NA) | 8 (0.030) | 6/248 | NT | 4.3% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | CP009273 | = 313078 | 179 (0.610) | intergenic (‑198/‑72) | ykgA/ykgQ | pseudogene, AraC family;putative regulator; Not classified; putative ARAC‑type regulatory protein/pseudogene, putative dehydrogenase | |||||