mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,602,055 | 0 | C | G | 26.1% | 36.9 / 10.6 | 23 | intergenic (+46/+56) | zntA/tusA | zinc, cobalt and lead efflux system/mnm(5)‑s(2)U34‑tRNA 2‑thiolation sulfurtransferase |
| * | CP009273 | 2,525,638 | 0 | G | A | 22.2% | 127.3 / 33.7 | 64 | intergenic (+55/‑130) | cysZ/cysK | EI24 family inner membrane protein; putative sulfate transporter/cysteine synthase A, O‑acetylserine sulfhydrolase A subunit |
| * | CP009273 | 3,384,766 | 0 | A | C | 21.9% | 172.5 / 14.7 | 82 | F208V (TTT→GTT) | tldD | putative peptidase |
| * | CP009273 | 3,952,875 | 0 | T | A | 20.6% | 64.6 / 10.4 | 34 | intergenic (+70/+17) | ilvC/ppiC | ketol‑acid reductoisomerase, NAD(P)‑binding/peptidyl‑prolyl cis‑trans isomerase C (rotamase C) |
| * | CP009273 | 4,366,636 | 0 | A | T | 20.0% | 137.4 / 28.8 | 66 | intergenic (+120/‑56) | ecnB/sugE | entericidin B membrane lipoprotein/multidrug efflux system protein |
| Marginal new junction evidence (lowest skew 10 of 237 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 377428 = | NA (NA) | 19 (0.270) | 18/264 | 3.9 | NA | coding (299/906 nt) | insD1 | IS2 transposase TnpB |
| ? | CP009273 | 377513 = | NA (NA) | coding (384/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | CP009273 | = 220908 | NA (NA) | 19 (0.270) | 17/268 | 4.2 | NA | noncoding (651/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | CP009273 | = 221011 | NA (NA) | noncoding (754/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | CP009273 | 311274 = | NA (NA) | 24 (0.360) | 15/254 | 4.4 | NA | coding (273/300 nt) | insE1 | IS3 transposase A |
| ? | CP009273 | 311310 = | NA (NA) | coding (13/867 nt) | insF1 | IS3 transposase B | |||||
| * | ? | CP009273 | 3982966 = | 65 (0.910) | 19 (0.280) | 15/256 | 4.5 | 22.7% | coding (223/741 nt) | hemD | uroporphyrinogen III synthase |
| ? | CP009273 | 3983063 = | 69 (1.030) | coding (126/741 nt) | hemD | uroporphyrinogen III synthase | |||||
| * | ? | CP009273 | = 4326852 | 61 (0.850) | 16 (0.230) | 15/262 | 4.6 | 22.8% | intergenic (‑4/+133) | adiC/adiY | arginine:agmatine antiporter/adi system transcriptional activator |
| ? | CP009273 | = 4326920 | 50 (0.730) | intergenic (‑72/+65) | adiC/adiY | arginine:agmatine antiporter/adi system transcriptional activator | |||||
| * | ? | CP009273 | 2283271 = | NA (NA) | 14 (0.210) | 14/256 | 4.7 | 100% | noncoding (322/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2283438 = | 0 (0.000) | noncoding (155/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 2096094 = | NA (NA) | 14 (0.210) | 14/256 | 4.7 | NA | noncoding (331/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2096279 = | NA (NA) | noncoding (146/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | = 1390455 | 0 (0.000) | 14 (0.210) | 14/256 | 4.7 | 100% | coding (123/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | CP009273 | = 1390622 | NA (NA) | coding (290/1017 nt) | insH1 | IS5 transposase and trans‑activator | |||||
| * | ? | CP009273 | 684180 = | NA (NA) | 14 (0.210) | 14/256 | 4.7 | 100% | noncoding (322/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 684347 = | 0 (0.000) | noncoding (155/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 570911 = | NA (NA) | 14 (0.210) | 14/256 | 4.7 | NA | noncoding (331/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 571096 = | NA (NA) | noncoding (146/1195 nt) | IS5 | repeat region | |||||