mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 38.9% | 61.4 / 65.9 | 131 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,178,908 | 0 | T | G | 29.7% | 206.5 / 27.6 | 111 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 104,041 | 0 | G | T | 25.9% | 147.5 / 16.8 | 81 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 2,463,951 | 0 | G | T | 25.5% | 89.1 / 18.0 | 51 | intergenic (+10/‑343) | gtrS/tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related |
| * | CP009273 | 155,588 | 0 | C | A | 24.8% | 200.0 / 32.7 | 117 | C9F (TGC→TTC) | pcnB | poly(A) polymerase |
| * | CP009273 | 838,659 | 0 | C | G | 24.7% | 189.9 / 16.3 | 85 | A291G (GCC→GGC) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 2,998,305 | 0 | G | T | 23.6% | 172.9 / 14.2 | 106 | Q281K (CAA→AAA) | ygeV | putative sigma‑54‑interacting transcriptional activator |
| * | CP009273 | 357,056 | 0 | G | C | 23.2% | 253.8 / 14.3 | 95 | V172V (GTC→GTG) | lacA | thiogalactoside acetyltransferase |
| * | CP009273 | 838,652 | 0 | T | G | 22.6% | 178.2 / 15.8 | 84 | F289V (TTT→GTT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 2,178,926 | 0 | C | A | 22.5% | 221.8 / 13.9 | 112 | intergenic (‑146/+77) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 357,031 | 0 | C | A | 22.4% | 177.4 / 26.5 | 98 | V181F (GTT→TTT) | lacA | thiogalactoside acetyltransferase |
| * | CP009273 | 3,453,450 | 0 | A | C | 22.2% | 190.3 / 12.0 | 90 | K92T (AAA→ACA) | gspF | general secretory pathway component, cryptic |
| * | CP009273 | 910,669 | 0 | A | T | 20.0% | 175.7 / 15.3 | 88 | intergenic (‑356/+139) | ybjE/aqpZ | putative transporter/aquaporin Z |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3995016 = | 169 (1.240) | 3 (0.020) | 3/250 | 9.1 | 1.8% | coding (231/951 nt) | corA | magnesium/nickel/cobalt transporter |
| ? | CP009273 | = 3995012 | 161 (1.260) | coding (227/951 nt) | corA | magnesium/nickel/cobalt transporter | |||||
| * | ? | CP009273 | = 3483181 | 104 (0.760) | 3 (0.020) | 3/264 | 9.4 | 2.7% | coding (359/1221 nt) | argD | bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase |
| ? | CP009273 | 3483186 = | 114 (0.850) | coding (354/1221 nt) | argD | bifunctional acetylornithine aminotransferase/ succinyldiaminopimelate aminotransferase | |||||
| * | ? | CP009273 | 2164102 = | NA (NA) | 4 (0.030) | 3/268 | 9.5 | 2.3% | coding (90/867 nt) | insF1 | IS3 transposase B |
| ? | CP009273 | = 4005261 | 169 (1.240) | coding (826/900 nt) coding (916/954 nt) |
yigM metR |
putative inner membrane EamA‑like transporter methionine biosynthesis regulon transcriptional regulator |
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