mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 34 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,177,245 | 0 | G | T | 69.4% | 8.4 / 10.7 | 37 | intergenic (‑41/+267) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 2,177,228 | 0 | C | G | 64.0% | ‑3.5 / 11.0 | 39 | intergenic (‑24/+284) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 2,177,255 | 0 | G | T | 61.0% | 13.1 / 18.3 | 41 | intergenic (‑51/+257) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 2,177,221 | 0 | T | G | 56.4% | ‑4.8 / 32.1 | 39 | intergenic (‑17/+291) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 2,177,234 | 0 | C | G | 56.0% | ‑3.7 / 18.1 | 35 | intergenic (‑30/+278) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 708,004 | 0 | C | A | 46.4% | 28.7 / 10.6 | 29 | intergenic (+247/‑330) | glnS/chiP | glutamine‑‑tRNA ligase/chitobiose outer membrane channel |
| * | NC_000913 | 3,407,971 | 0 | T | G | 45.8% | 16.3 / 10.1 | 24 | L122R (CTT→CGT) | panF | pantothenate:Na(+) symporter |
| * | NC_000913 | 3,815,809 | 0 | G | C | 45.0% | 14.8 / 11.1 | 20 | intergenic (‑41/+54) | pyrE/rph | orotate phosphoribosyltransferase/truncated RNase PH |
| * | NC_000913 | 3,004,946 | 0 | G | T | 43.2% | 32.1 / 21.2 | 44 | Q281K (CAA→AAA) | ygeV | putative sigma(54)‑dependent transcriptional regulator YgeV |
| * | NC_000913 | 2,177,267 | 0 | C | A | 42.9% | 31.5 / 11.2 | 42 | intergenic (‑63/+245) | gatY/fbaB | tagatose‑1,6‑bisphosphate aldolase 2 subunit GatY/fructose‑bisphosphate aldolase class I |
| * | NC_000913 | 522,068 | 0 | G | C | 41.4% | 33.2 / 10.5 | 29 | W551C (TGG→TGC) | ybbP | putative ABC transporter membrane subunit YbbP |
| * | NC_000913 | 3,455,671 | 0 | A | T | 40.0% | 24.1 / 11.8 | 35 | I32F (ATT→TTT) | gspC | Type II secretion system protein GspC |
| * | NC_000913 | 1,391,712 | 0 | C | G | 38.6% | 71.1 / 13.4 | 46 | E48Q (GAA→CAA) | ycjY | putative hydrolase YcjY |
| * | NC_000913 | 522,069 | 0 | C | A | 37.9% | 24.8 / 11.8 | 29 | Q552K (CAA→AAA) | ybbP | putative ABC transporter membrane subunit YbbP |
| * | NC_000913 | 3,455,677 | 0 | A | T | 37.8% | 30.0 / 18.1 | 37 | N34Y (AAT→TAT) | gspC | Type II secretion system protein GspC |
| * | NC_000913 | 512,722 | 0 | C | G | 37.5% | 22.3 / 10.4 | 24 | A49A (GCC→GCG) | ybaT | putative transporter YbaT |
| * | NC_000913 | 281,921 | 0 | C | A | 37.3% | 78.5 / 35.8 | 59 | L21F (TTG→TTT) | yagA | CP4‑6 prophage; integrase core domain‑containing protein YagA |
| * | NC_000913 | 4,527,725 | 0 | A | C | 37.1% | 30.4 / 12.5 | 35 | F86V (TTT→GTT) | sgcA | putative PTS enzyme IIA component SgcA |
| * | NC_000913 | 1,297,110 | 0 | A | G | 36.8% | 37.4 / 18.0 | 41 | S338P (TCC→CCC) | adhE | aldehyde‑alcohol dehydrogenase |
| * | NC_000913 | 4,050,007 | 0 | A | T | 36.1% | 43.1 / 12.8 | 36 | noncoding (109/109 nt) | spf | small regulatory RNA Spot 42 |