mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 165 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4610404 | 125 (1.150) | 4 (0.040) | 3/244 | NT | 3.2% | coding (985/1224 nt) | deoB | phosphopentomutase |
| ? | CP009273 | = 4610433 | 122 (1.160) | coding (1014/1224 nt) | deoB | phosphopentomutase | |||||
| * | ? | CP009273 | 4594592 = | 101 (0.930) | 4 (0.040) | 4/240 | NT | 4.0% | coding (616/678 nt) | bglJ | bgl operon transcriptional activator |
| ? | CP009273 | 4594620 = | 94 (0.910) | coding (644/678 nt) | bglJ | bgl operon transcriptional activator | |||||
| * | ? | CP009273 | = 4560252 | 111 (1.020) | 4 (0.040) | 3/244 | NT | 3.5% | coding (1140/1413 nt) | yjiR | putative DNA‑binding transcriptional regulator/putative aminotransferase |
| ? | CP009273 | = 4560281 | 116 (1.100) | coding (1111/1413 nt) | yjiR | putative DNA‑binding transcriptional regulator/putative aminotransferase | |||||
| * | ? | CP009273 | = 4418573 | 126 (1.160) | 6 (0.060) | 4/236 | NT | 4.7% | intergenic (‑39/‑179) | ytfB/fklB | OapA family protein/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) |
| ? | CP009273 | = 4418589 | 126 (1.240) | intergenic (‑55/‑163) | ytfB/fklB | OapA family protein/FKBP‑type peptidyl‑prolyl cis‑trans isomerase (rotamase) | |||||
| * | ? | CP009273 | 4400793 = | 91 (0.840) | 3 (0.030) | 3/244 | NT | 3.1% | coding (424/699 nt) | yjfJ | PspA/IM30 family protein |
| ? | CP009273 | 4400837 = | 100 (0.950) | coding (468/699 nt) | yjfJ | PspA/IM30 family protein | |||||
| * | ? | CP009273 | = 4367973 | 128 (1.170) | 4 (0.040) | 4/244 | NT | 3.2% | coding (789/1134 nt) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| ? | CP009273 | = 4368005 | 122 (1.160) | coding (757/1134 nt) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak | |||||
| * | ? | CP009273 | = 4366301 | 133 (1.220) | 5 (0.050) | 5/244 | NT | 3.8% | intergenic (+42/‑69) | ecnA/ecnB | entericidin A membrane lipoprotein, antidote entericidin B/entericidin B membrane lipoprotein |
| ? | CP009273 | = 4366355 | 123 (1.170) | intergenic (+96/‑15) | ecnA/ecnB | entericidin A membrane lipoprotein, antidote entericidin B/entericidin B membrane lipoprotein | |||||
| * | ? | CP009273 | 4323823 = | 94 (0.860) | 4 (0.040) | 4/244 | NT | 4.4% | coding (1585/1644 nt) | eptA | lipid A phosphoethanolamine transferase |
| ? | CP009273 | 4323856 = | 83 (0.790) | coding (1552/1644 nt) | eptA | lipid A phosphoethanolamine transferase | |||||
| * | ? | CP009273 | 4323069 = | 136 (1.250) | 3 (0.030) | 3/240 | NT | 2.4% | coding (21/1092 nt) | basS | sensory histidine kinase in two‑component regulatory system with BasR |
| ? | CP009273 | 4323122 = | 116 (1.120) | coding (646/669 nt) | basR | response regulator in two‑component regulatory system with BasS | |||||
| * | ? | CP009273 | = 4315173 | 149 (1.370) | 4 (0.040) | 3/248 | NT | 2.8% | coding (386/444 nt) | yjdN | metalloprotein superfamily protein |
| ? | CP009273 | = 4315206 | 136 (1.270) | coding (353/444 nt) | yjdN | metalloprotein superfamily protein | |||||