mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 40.0% | 29.5 / 21.9 | 60 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 838,652 | 0 | T | G | 37.7% | 73.9 / 18.2 | 53 | F289V (TTT→GTT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 4,402,598 | 0 | C | G | 30.0% | 113.4 / 13.2 | 51 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 104,041 | 0 | G | T | 28.9% | 59.3 / 10.4 | 38 | intergenic (+80/‑151) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| * | CP009273 | 2,178,925 | 0 | T | A | 23.5% | 170.0 / 11.5 | 68 | intergenic (‑145/+78) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 3,525,185 | 0 | C | A | 21.0% | 105.8 / 13.0 | 62 | R205L (CGT→CTT) | yhgE | DUF4153 family putative inner membrane protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4532507 | 27 (0.340) | 11 (0.150) | 10/250 | 3.5 | 26.5% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 36 (0.480) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 4532499 = | 31 (0.390) | 6 (0.080) | 5/250 | 5.3 | 15.6% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 36 (0.480) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 1716873 = | 75 (0.930) | 4 (0.050) | 4/246 | 5.8 | 5.4% | coding (496/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump |
| ? | CP009273 | = 1716869 | 71 (0.960) | coding (492/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump | |||||
| * | ? | CP009273 | = 3341024 | 88 (1.090) | 3 (0.040) | 3/260 | 6.6 | 3.4% | coding (551/855 nt) | yhbJ | adaptor protein RapZ for GlmZ/GlmY sRNA decay; glucosamine‑6‑phosphate regulated; NTPase |
| ? | CP009273 | 4138347 = | NA (NA) | intergenic (‑102/+113) | yijO/eptC | AraC family putative transcriptional activator/LPS heptose I phosphoethanolamine transferase | |||||
| * | ? | CP009273 | 2909245 = | 110 (1.370) | 3 (0.040) | 3/262 | 6.6 | 3.1% | coding (830/2757 nt) | barA | hybrid sensory histidine kinase, in two‑component regulatory system with UvrY |
| ? | CP009273 | = 3168746 | 77 (0.980) | coding (10/1893 nt) | parE | DNA topoisomerase IV, subunit B | |||||
| * | ? | CP009273 | 3160647 = | 77 (0.960) | 3 (0.040) | 3/266 | 6.7 | 4.0% | coding (431/1608 nt) | ygiS | putative inner membrane ABC superfamily transporter permease |
| ? | CP009273 | = 4155378 | 68 (0.850) | coding (1812/1845 nt) coding (23/858 nt) |
btuB murI |
vitamin B12/cobalamin outer membrane transporter glutamate racemase |
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