mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 42.9% | 13.5 / 34.7 | 70 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 4,402,596 | 0 | T | G | 38.1% | 58.0 / 18.4 | 42 | V131V (GTT→GTG) | yjfM | DUF1190 family protein |
| * | CP009273 | 161,056 | 0 | C | G | 33.3% | 55.6 / 12.5 | 33 | intergenic (+35/‑161) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| * | CP009273 | 4,402,598 | 0 | C | G | 32.5% | 71.2 / 16.8 | 42 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 2,178,908 | 0 | T | G | 30.9% | 91.4 / 10.6 | 55 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 838,652 | 0 | T | G | 22.8% | 166.5 / 13.3 | 79 | F289V (TTT→GTT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 838,672 | 0 | G | T | 20.2% | 159.7 / 10.6 | 84 | M295I (ATG→ATT) | rlmF | 23S rRNA m(6)A1618 methyltransferase, SAM‑dependent |
| * | CP009273 | 104,042 | 0 | A | T | 20.0% | 144.0 / 12.8 | 55 | intergenic (+81/‑150) | lpxC/secM | UDP‑3‑O‑acyl N‑acetylglucosamine deacetylase/regulator of secA translation |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4532507 | 52 (0.530) | 24 (0.260) | 14/250 | 3.3 | 31.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 58 (0.630) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 4532499 = | 57 (0.580) | 14 (0.150) | 12/250 | 3.8 | 20.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | 4532813 = | 58 (0.630) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | = 3244523 | 81 (0.820) | 3 (0.030) | 3/260 | 7.7 | 3.6% | coding (141/987 nt) | yqjG | putative S‑transferase |
| ? | CP009273 | = 4476856 | 83 (0.870) | coding (822/1101 nt) | lptF | lipopolysaccharide export ABC permease of the LptBFGC export complex | |||||
| * | ? | CP009273 | = 2297136 | 66 (0.670) | 3 (0.030) | 3/266 | 7.8 | 4.3% | intergenic (‑160/‑248) | napF/eco | ferredoxin‑type protein, role in electron transfer to periplasmic nitrate reductase NapA/ecotin, a serine protease inhibitor |
| ? | CP009273 | 2297144 = | 68 (0.700) | intergenic (‑168/‑240) | napF/eco | ferredoxin‑type protein, role in electron transfer to periplasmic nitrate reductase NapA/ecotin, a serine protease inhibitor | |||||
| * | ? | CP009273 | = 3196116 | 94 (0.960) | 3 (0.030) | 3/268 | 7.9 | 3.1% | coding (867/1239 nt) | cca | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase |
| ? | CP009273 | 3196120 = | 95 (0.970) | coding (871/1239 nt) | cca | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase | |||||