mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3781255 = | 455 (1.120) | 4 (0.010) | 3/230 | NT | 0.94% | coding (1058/1260 nt) | envC | activator of AmiB,C murein hydrolases, septal ring factor |
| ? | CP009273 | = 3781251 | 424 (1.140) | coding (1054/1260 nt) | envC | activator of AmiB,C murein hydrolases, septal ring factor | |||||
| * | ? | CP009273 | 3730016 = | 466 (1.150) | 3 (0.010) | 3/230 | NT | 0.68% | coding (522/825 nt) | bax | putative glucosaminidase |
| ? | CP009273 | = 3730012 | 446 (1.200) | coding (526/825 nt) | bax | putative glucosaminidase | |||||
| * | ? | CP009273 | 3358722 = | 368 (0.910) | 8 (0.020) | 6/250 | NT | 2.1% | pseudogene (179/367 nt) | yhcE | pseudogene fragment; interrupted by IS5 |
| ? | CP009273 | 4487998 = | NA (NA) | intergenic (+241/‑91) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||
| * | ? | CP009273 | 2989720 = | NA (NA) | 15 (0.040) | 9/250 | NT | 3.6% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | CP009273 | = 3358726 | 397 (0.980) | pseudogene (183/367 nt) | yhcE | pseudogene fragment; interrupted by IS5 | |||||
| * | ? | CP009273 | 1716873 = | 380 (0.940) | 4 (0.010) | 4/228 | NT | 1.1% | coding (496/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump |
| ? | CP009273 | = 1716869 | 360 (0.980) | coding (492/2013 nt) | ydhK | putative efflux protein (PET) component of YdhJK efflux pump | |||||
| * | ? | CP009273 | 955021 = | 455 (1.120) | 3 (0.010) | 3/232 | NT | 0.69% | coding (754/1284 nt) | aroA | 5‑enolpyruvylshikimate‑3‑phosphate synthetase |
| ? | CP009273 | = 955017 | 438 (1.170) | coding (750/1284 nt) | aroA | 5‑enolpyruvylshikimate‑3‑phosphate synthetase | |||||
| * | ? | CP009273 | 541128 = | 454 (1.120) | 3 (0.010) | 3/230 | NT | 0.73% | coding (692/1050 nt) | allD | ureidoglycolate dehydrogenase |
| ? | CP009273 | = 541124 | 393 (1.060) | coding (696/1050 nt) | allD | ureidoglycolate dehydrogenase | |||||
| * | ? | CP009273 | = 360286 | NA (NA) | 9 (0.020) +AATTC |
6/240 | NT | 2.8% | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3416618 = | 324 (0.800) | intergenic (+65/+164) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon | |||||
| * | ? | CP009273 | 89334 = | 483 (1.190) | 7 (0.020) | 6/230 | NT | 1.5% | coding (1435/1767 nt) | ftsI | transpeptidase involved in septal peptidoglycan synthesis (penicillin‑binding protein 3) |
| ? | CP009273 | = 89330 | 467 (1.260) | coding (1431/1767 nt) | ftsI | transpeptidase involved in septal peptidoglycan synthesis (penicillin‑binding protein 3) | |||||