mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4170593 = | 333 (0.740) | 3 (0.010) | 3/228 | NT | 0.96% | coding (106/366 nt) | rplL | 50S ribosomal subunit protein L7/L12 |
| ? | CP009273 | = 4170589 | 310 (0.750) | coding (102/366 nt) | rplL | 50S ribosomal subunit protein L7/L12 | |||||
| * | ? | CP009273 | = 3111466 | 531 (1.180) | 12 (0.030) | 6/248 | NT | 2.2% | coding (1006/4563 nt) | yghJ | DUF4092 family putative lipoprotein peptidase |
| ? | CP009273 | 3123505 = | NA (NA) | intergenic (‑3/‑32) | yghO/insH1 | pseudogene, DNA‑binding transcriptional regulator homology/IS5 transposase and trans‑activator | |||||
| * | ? | CP009273 | 2086467 = | 450 (1.000) | 4 (0.010) | 3/220 | NT | 0.99% | coding (589/1071 nt) | hisC | histidinol‑phosphate aminotransferase |
| ? | CP009273 | = 2086462 | 399 (1.000) | coding (584/1071 nt) | hisC | histidinol‑phosphate aminotransferase | |||||
| * | ? | CP009273 | 1763774 = | 741 (1.640) | 7 (0.020) | 4/228 | NT | 0.98% | coding (444/1113 nt) | ydiK | UPF0118 family inner membrane protein |
| ? | CP009273 | = 1763770 | 729 (1.760) | coding (440/1113 nt) | ydiK | UPF0118 family inner membrane protein | |||||
| * | ? | CP009273 | 1669927 = | 394 (0.870) | 3 (0.010) | 3/228 | NT | 0.81% | coding (691/1389 nt) | pntB | pyridine nucleotide transhydrogenase, beta subunit |
| ? | CP009273 | = 1669920 | 372 (0.900) | coding (698/1389 nt) | pntB | pyridine nucleotide transhydrogenase, beta subunit | |||||
| * | ? | CP009273 | 1292815 = | 572 (1.270) | 4 (0.010) | 4/226 | NT | 0.75% | coding (763/2676 nt) | adhE | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase |
| ? | CP009273 | = 1292811 | 538 (1.310) | coding (767/2676 nt) | adhE | fused acetaldehyde‑CoA dehydrogenase/iron‑dependent alcohol dehydrogenase/pyruvate‑formate lyase deactivase | |||||
| * | ? | CP009273 | 1203248 = | 203 (0.450) | 4 (0.010) +C |
4/246 | NT | 2.2% | coding (292/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205074 = | 160 (0.350) | pseudogene (2/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 360286 | NA (NA) | 7 (0.020) +AATTC |
5/238 | NT | 1.7% | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3416618 = | 430 (0.950) | intergenic (+65/+164) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon | |||||
| * | ? | CP009273 | 101848 = | 461 (1.020) | 6 (0.010) | 6/224 | NT | 1.4% | coding (57/1152 nt) | ftsZ | GTP‑binding tubulin‑like cell division protein |
| ? | CP009273 | = 101844 | 405 (1.000) | coding (53/1152 nt) | ftsZ | GTP‑binding tubulin‑like cell division protein | |||||
| * | ? | CP009273 | 89334 = | 470 (1.040) | 4 (0.010) | 4/228 | NT | 0.89% | coding (1435/1767 nt) | ftsI | transpeptidase involved in septal peptidoglycan synthesis (penicillin‑binding protein 3) |
| ? | CP009273 | = 89330 | 457 (1.100) | coding (1431/1767 nt) | ftsI | transpeptidase involved in septal peptidoglycan synthesis (penicillin‑binding protein 3) | |||||