mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,177,543 | 0 | G | A | 74.6% | 223.6 / 88.0 | 123 | E756K (GAA→AAA) | rpoC | RNA polymerase, beta prime subunit |
| Marginal new junction evidence (lowest skew 10 of 286 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2721617 = | NA (NA) | 32 (0.340) | 27/250 | 4.7 | NA | noncoding (927/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 2060067 = | 30 (0.300) | 27 (0.280) | 24/252 | 5.5 | 48.5% | noncoding (768/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2095768 = | NA (NA) | noncoding (657/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 270093 = | NA (NA) | 27 (0.280) | 24/252 | 5.5 | NA | noncoding (768/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 270204 = | NA (NA) | noncoding (657/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | = 223172 | 30 (0.300) | 28 (0.290) | 23/250 | 5.6 | 49.6% | noncoding (927/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2721695 = | NA (NA) | noncoding (849/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | 1422389 = | 81 (0.810) | 27 (0.280) | 23/252 | 5.7 | 34.3% | noncoding (663/1196 nt) | IS5 | repeat region |
| ? | CP009273 | 2060073 = | 26 (0.270) | noncoding (762/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | = 1391062 | NA (NA) | 26 (0.270) | 23/252 | 5.7 | 25.2% | coding (730/1017 nt) | insH1 | IS5 transposase and trans‑activator |
| ? | CP009273 | 1422389 = | 81 (0.810) | noncoding (663/1196 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | = 4532507 | 64 (0.640) | 18 (0.190) | 17/246 | 7.2 | 24.1% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | CP009273 | = 4532803 | 54 (0.580) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | CP009273 | 269749 = | NA (NA) | 16 (0.170) | 15/252 | 8.1 | NA | noncoding (1112/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 269794 = | NA (NA) | noncoding (1067/1195 nt) | IS5 | repeat region | |||||
| * | ? | CP009273 | 3210793 = | NA (NA) | 17 (0.170) | 14/256 | 8.6 | 12.9% | noncoding (1/89 nt) | REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP229 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | CP009273 | 3210882 = | 116 (1.180) | intergenic (+121/+33) | yqjI/aer | PadR family putative transcriptional regulator/fused signal transducer for aerotaxis sensory component/methyl accepting chemotaxis component | |||||
| * | ? | CP009273 | 4170977 = | 118 (1.170) | 15 (0.160) | 13/252 | 8.8 | 11.3% | intergenic (+124/‑196) | rplL/rpoB | 50S ribosomal subunit protein L7/L12/RNA polymerase, beta subunit |
| ? | CP009273 | 4171076 = | 123 (1.280) | intergenic (+223/‑97) | rplL/rpoB | 50S ribosomal subunit protein L7/L12/RNA polymerase, beta subunit | |||||