mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,734 | 0 | G | T | 30.8% | 84.2 / 45.2 | 120 | intergenic (‑51/+257) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| * | CP009273 | 2,178,908 | 0 | T | G | 30.1% | 170.9 / 14.8 | 93 | intergenic (‑128/+95) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| * | CP009273 | 4,402,596 | 0 | T | G | 26.4% | 197.0 / 24.0 | 91 | V131V (GTT→GTG) | yjfM | DUF1190 family protein |
| * | CP009273 | 2,463,951 | 0 | G | T | 25.0% | 31.3 / 10.2 | 24 | intergenic (+10/‑343) | gtrS/tfaS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage/pseudogene, CPS‑53 (KpLE1) prophage; tail fiber assembly protein fragment;Phage or Prophage Related |
| * | CP009273 | 4,402,598 | 0 | C | G | 25.0% | 225.0 / 14.6 | 91 | S132C (TCT→TGT) | yjfM | DUF1190 family protein |
| * | CP009273 | 1,160,002 | 0 | A | T | 23.3% | 222.1 / 15.7 | 91 | D151V (GAT→GTT) | nagZ | beta N‑acetyl‑glucosaminidase |
| * | CP009273 | 2,958,460 | 0 | T | G | 21.9% | 171.0 / 11.9 | 74 | N19H (AAC→CAC) | thyA | thymidylate synthetase |
| * | CP009273 | 2,404,729 | 0 | C | A | 20.8% | 208.5 / 10.5 | 96 | V35F (GTC→TTC) | yfbS | putative transporter |
| * | CP009273 | 2,178,926 | 0 | C | A | 20.2% | 196.0 / 14.1 | 99 | intergenic (‑146/+77) | thiM/rcnR | hydoxyethylthiazole kinase/transcriptional repressor of rcnA |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1203246 = | 115 (1.070) | 19 (0.200) | 15/236 | 3.3 | 18.6% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 65 (0.690) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1203261 | 105 (0.980) | 14 (0.150) | 9/236 | 5.0 | 15.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 64 (0.680) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 4176649 = | 152 (1.420) | 3 (0.030) | 3/258 | 8.4 | 2.4% | coding (1372/4224 nt) | rpoC | RNA polymerase, beta prime subunit |
| ? | CP009273 | = 4211785 | 96 (0.930) | coding (631/2187 nt) | arpA | ankyrin repeat protein | |||||
| * | ? | CP009273 | = 76104 | 129 (1.200) | 5 (0.050) | 3/264 | 8.5 | 4.4% | coding (1248/1401 nt) | leuC | 3‑isopropylmalate dehydratase large subunit |
| ? | CP009273 | 2049942 = | 92 (0.870) | coding (1401/1455 nt) | amn | AMP nucleosidase | |||||
| * | ? | CP009273 | = 3331723 | 91 (0.850) | 3 (0.030) | 3/268 | 8.6 | 2.8% | coding (98/552 nt) | mlaD | ABC transporter maintaining OM lipid asymmetry, anchored periplasmic binding protein |
| ? | CP009273 | 3331733 = | 115 (1.070) | coding (88/552 nt) | mlaD | ABC transporter maintaining OM lipid asymmetry, anchored periplasmic binding protein | |||||