mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 852,865 | 0 | C | T | 35.3% | 12.9 / 14.4 | 17 | L483L (CTG→TTG) | ybiT | putative transporter subunit of ABC superfamily: ATP‑binding component |
| * | CP009273 | 4,173,082 | 0 | G | T | 32.1% | 22.0 / 24.7 | 28 | R637L (CGT→CTT) | rpoB | RNA polymerase, beta subunit |
| * | CP009273 | 1,534,604 | 0 | C | A | 29.6% | 25.4 / 16.8 | 27 | G748G (GGG→GGT) | narZ | nitrate reductase 2 (NRZ), alpha subunit |
| * | CP009273 | 1,505,037 | 1 | . | A | 26.7% | 25.0 / 16.5 | 15 | coding (778/1407 nt) | ydcR | putative DNA‑binding transcriptional regulator/putative amino transferase |
| * | CP009273 | 939,274 | 0 | G | T | 25.0% | 32.6 / 13.6 | 24 | E135D (GAG→GAT) | dmsB | dimethyl sulfoxide reductase, anaerobic, subunit B |
| * | CP009273 | 798,856 | 0 | G | C | 23.8% | 42.5 / 10.4 | 21 | intergenic (+80/‑103) | ybhI/ybhJ | putative transporter/putative hydratase |
| * | CP009273 | 2,863,255 | 0 | C | A | 21.4% | 44.1 / 13.1 | 28 | G127W (GGG→TGG) | umpG | broad specificity 5'(3')‑nucleotidase and polyphosphatase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 212576 = | 34 (1.050) | 3 (0.090) | 3/236 | 2.0 | 8.2% | noncoding (63/111 nt) | RIP16 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP16 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | CP009273 | = 4544355 | NA (NA) | noncoding (34/34 nt) | REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP346 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | CP009273 | = 1091516 | 35 (0.970) | 5 (0.140) +CAAT |
3/260 | 2.2 | 12.8% | coding (218/987 nt) | ycdU | putative inner membrane protein |
| ? | CP009273 | 3936992 = | NA (NA) | intergenic (+122/‑72) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon | |||||
| * | ? | CP009273 | = 1064957 | 65 (1.800) | 3 (0.080) | 3/264 | 2.2 | 5.1% | coding (339/1329 nt) | rutG | pyrimidine permease |
| ? | CP009273 | = 2658208 | 47 (1.320) | coding (460/855 nt) | yfhR | putative S9 family prolyl oligopeptidase | |||||
| * | ? | CP009273 | 807923 = | 71 (1.960) | 5 (0.140) | 3/262 | 2.2 | 6.2% | coding (198/678 nt) | bioD | dethiobiotin synthetase |
| ? | CP009273 | 4507951 = | 82 (2.320) | coding (102/522 nt) | fecI | RNA polymerase, sigma 19 factor | |||||
| * | ? | CP009273 | 89928 = | 22 (0.610) | 3 (0.080) | 3/268 | 2.2 | 9.2% | coding (276/1488 nt) | murE | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate:meso‑ diaminopimelate ligase |
| ? | CP009273 | 851918 = | 37 (1.020) | coding (500/1593 nt) | ybiT | putative transporter subunit of ABC superfamily: ATP‑binding component | |||||